FMO10039.5prime Sequence
1122 bp (1028 high quality bases) assembled on 2010-10-30
> FMO10039.5prime
CAGTCGACATGTGGCAGGGAATCGTGTGCAGCTTGGCTTTATGCCTCGTC
GGATTGGCGGGTCTCGGCATCGCCAACAATCTCGCCGGCTACGAAGGTTA
TACAAAATACACGGTGCAACATGGAGACGAGAATGCCTTCAAGTACATGG
TCGACCTGCAGACGAATGACGCGGAGCTGGACTTTTGGTTGCTGACCAGA
AACTCCTCCGTGCTGACAGTGAGTCCCCGGCGGAAGACACAGTTCGAGGC
GAGTCTTTCCAGTTTGGGAGTTAGCTACGAGATGCAGCCGCTCATGGAGC
TGATGGCGGCCCTTCAAGCGAACAGTTCCTTTGCGGATGACAACTACGAT
GGGGAGTACGAGGAGTGCCAGCAGGATGAGTGCGAGCAGGCGGAGCGACC
ACGTCGAAGGACTCGTCGTCAGGCTCGCGGCTTCTTCTCGCACTATCCGC
GGTATCATGAGGTGCTCAGCTTCATGAGTGGCTTGGCCGCCAGATATCCT
CAGTTCTGCCGCTATGAATCCTTGGGTCGTTCCAACGAGGGTCGCCACAT
AGCTGCTCTCTCTATTTCACTGAACAGTAGGGTACGTCCTCGTCGAGTGG
CCTATATCCAGGCAGCCACCCACGGTAGGGAGTGGATTACTACGCAGACC
GTTCTCTACTTGGCCTACGAACTGCTGAGCAATCTGCGCGCCTTCACGAG
GGTCCTGCAGGATGTGGAGATCTTTCTGGTGCCGCTGGTCAATCCCGATG
GCTATGAATACACGCACACAACGGATCGTTTCTGGCGCAAGAACCGTCAT
CGTTATGCGGGTCATTCCTGCTCCGGCGTGGACATCAATCGTAACTTTGG
CAATCACTGGAACTATCAGGAGCCAGCCAGATCTCTGCTCGGAGTGTACT
CGGGCACTGCGCCCAATTCGGAGCCGGAGACCTCGGCGGTGGTGCGTATC
TGGAATTCATCGAAACCGTGTGAACTCAGCTGATGTTCACTCATTTGGCT
ATCATTTTTATCCCTACGCTATGCGAAAACACCGTGCACACGGTGACGCT
GCGCTCGGTGATCTGAAGTGCACGATCGCAGTACGTGACGGCCTACCATG
AACTTCGCTCCATTTGTCAAGG
FMO10039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8563-RB | 2121 | CG8563-RB | 690..1760 | 9..1060 | 4860 | 97.9 | Plus |
| CG8563-RA | 1786 | CG8563-RA | 355..1425 | 9..1060 | 4860 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7393592..7394269 | 97..774 | 3375 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7394737..7394846 | 773..881 | 500 | 99.1 | Plus |
| 3L | 28110227 | 3L | 7391431..7391519 | 9..97 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 7394936..7395058 | 883..999 | 335 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:12:18 has no hits.
FMO10039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:39 Download gff for
FMO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8563-RA | 347..1436 | 3..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:52 Download gff for
FMO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8563-RA | 349..1438 | 3..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:59 Download gff for
FMO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8563-RA | 349..1438 | 3..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:59 Download gff for
FMO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7391425..7391519 | 3..97 | 96 | -> | Plus |
| 3L | 7393593..7394268 | 98..773 | 99 | -> | Plus |
| 3L | 7394738..7394848 | 774..882 | 97 | -> | Plus |
| 3L | 7394936..7395090 | 883..1027 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:52 Download gff for
FMO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7384525..7384619 | 3..97 | 96 | -> | Plus |
| arm_3L | 7386693..7387368 | 98..773 | 99 | -> | Plus |
| arm_3L | 7387838..7387948 | 774..882 | 97 | -> | Plus |
| arm_3L | 7388036..7388190 | 883..1027 | 92 | -> | Plus |
