FMO10058.5prime Sequence
1131 bp (1020 high quality bases) assembled on 2010-10-30
> FMO10058.5prime
CAGTCGACATGCTGAACACCTTCAGTTCGGTGAGGCAGTACCTCAAGTTC
GATCTCACGCGTGTGGTCATCGACAATATAGTGTTCAAGCTGCACTATCG
ATGGACCTTCGTAATACTCCTAGTGGCCACCCTCCTGATCACGTCGCGCC
AGTACATCGGGGAGCACATCCAGTGCCTATCCGACGGTGTTGTGTCTCCG
GTCATCAACACCTTCTGCTTCTTCACGCCCACCTTCACAGTGGTACGTGA
CCAGAACCAAACTGCCTACAGGCCGGGAAGTGAGCCACCTGGTATAGGGG
CATTCGATCCCGAAAAGGACACGATCAAGCGGCATGCATACTACCAGTGG
GTGCCCTTTGTCCTGTTCTTCCAGGCTCTCTGCTTCTACATTCCCCATGC
CCTGTGGAAGAGTTGGGAGGGCGGCCGGATCAAGGCCCTGGTCTTTGGTC
TTCGAATGGTGGGTCTAACGAGGTACCTGAAGAACGATAGTCTGCGTATC
GGCAAGCTGAACATTCCCTCGATGGCGGAGGCGGAGGAGCGGGTCAAGGA
CATTCGTCGCACAATGATCGACCGGATGCGGCTGAATCAATCGTGGGGTG
CCCACTTGGTCTTCGCGGAGGTGCTCAATCTGATTAATCTTCTGCTGCAG
ATCACATGGACCAACCGTTTTTTGGGCGGTCAATTCCTCACACTGGGACC
ACATGCCCTGAAAAATCGGTGGTCCGACGAGCTGAGCGTTTTGGATCTAG
TATTCCCGAAGATTACCAAGTGCAAGTTCCACAAATTTGGTGACTCTGGC
TCCATTCAAATGCACGATGCCCTTTGCGTGATGGCGCTGAACATCATGAA
CGAGAAGATCTACATTATTCTGTGGTTCTGGTACGCCTTCCTTTTGATTG
TACTGTTCTGGGACTGCTTTGGAGATTTTAACCCTGTGCTTCTACAGAAA
TGTCACATTTACCCGCTGGTCTCTCTATGGGCAAGCTGTCACTGGACGAA
ACGAATTATTGGCGGTAATGATAATGTACTTTCCAACTGATGTTCTTTTC
TTCCTGGCGTTCAACCTTTCGATCCATTTCAGAAGGTATCTATCTTTGGC
TATGAATACATCGATACCATACAAGTCATGG
FMO10058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx7-RA | 1634 | CG2977-RA | 200..1313 | 9..1102 | 4970 | 97.6 | Plus |
| Inx7-RB | 1690 | CG2977-RB | 488..1369 | 241..1102 | 3810 | 96.9 | Plus |
| Inx3-RC | 1652 | CG1448-RC | 864..981 | 765..882 | 185 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6992173..6992883 | 950..242 | 3440 | 99.6 | Minus |
| X | 23542271 | X | 6993177..6993413 | 245..9 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:13:16 has no hits.
FMO10058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:49 Download gff for
FMO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inx7-RA | 188..1271 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:56:19 Download gff for
FMO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx7-RA | 193..1276 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:24 Download gff for
FMO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx7-RA | 193..1276 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:24 Download gff for
FMO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6992173..6992882 | 243..950 | 99 | <- | Minus |
| X | 6993180..6993420 | 1..242 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:56:19 Download gff for
FMO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6886206..6886915 | 243..950 | 99 | <- | Minus |
| arm_X | 6887213..6887453 | 1..242 | 98 | | Minus |
