FMO10060.5prime Sequence
1175 bp (1054 high quality bases) assembled on 2010-10-30
> FMO10060.5prime
CAGTCGACATGGAGCGGGAAATTTACAGTGCGGAATACTTCGAGAGAGCT
TTGGCGAGAGCTTATGGTTGTGAAATGCTTCGCGTTGAGAACTTTCACAT
CAAGGCGGTGAGCCAGAAGGGCGAGAACTTTTGCAGCGTCATCTACCGGG
TGGCGTTGGTCTTTCGCAGGTCACCCGATGGCGCTCTCGAATCAGGAAAA
TATATTCTCAAGGATCTGCTGCCCGCCGCCGCTGCACTGGGCACCAACGA
AAAGGATATGTTCGAGGTACTCCTGCCTGCCATGCAAGCCATTCTTGAAG
AAGCTCCAAAGGAGATTGGCGAACACAAGCTGAGCGCAGATTGCTTGCTA
GTCGAGATATCTGCTGGAAAAGAGCTCTACATTCTGGAGGATCTGGGCGC
CCTAGGATACGAATCCTTTGATCGTCGTCAAGGCTTAAATCTGGAAGAAG
CCAAAATTTGCGTAAGGAAACTGGCTCAGTTCCACGGTGCATCCAAGGTT
TTGTACGAGAAGAAACCCGAATTGATTCAAAGGCTTTCGCCTTCTCACTA
TGCCAATGGATTGAACGATCGCTTCGCCCAGGCTCTCGTCTTGGAGGGCG
CCGAATATGCCGCAGAAGCGTTTGCCGAAGAACTTCCGGAAATATCAAAG
AAAATGAAGGCTCAAATACCGAAAGCATATACGAAAAGAATGCGAGATGT
CGTTGATCCAAACAAGTCATCATTGAATGCAGTTATTCATGGTGATCCCT
GGTTAAATAACATTATGTTTGATTTCGTTAATAAGAAGGCAACACTTGTG
GATTTCCAAAACTGTTACTGGGGTAGCCCGGCCATAGATCTCTACTTTCT
ATTTTACACCAGCCTCAAGCCTGAATTATTGCTAAATAATCAAGATGAGC
TTCTGAATTACTATTTCGACAATCTTCTGGAAACCCTGCGGCATTGCGGC
TATAAAGACAAACTGCCCACTTTTGGCCAGTTAAAGGATGAGATGAAACG
GTGTTTGTTTTATGGAATATTACACTGTAGTCTGGTGAACTTCCCATATG
TTGTGCTTCCCCTGAAGCCAGTGTTGGATTTCGGGGTTCACACCCTTCGT
AAATACCGGATGCCTATGTTAAAAAGCGACACCAATATATTCCGCCACGA
ACGAGTGCTTAACATAAGCCACTGC
FMO10060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32195-RC | 1563 | CG32195-RC | 143..1286 | 9..1158 | 5450 | 98.8 | Plus |
| CG32195-RB | 1701 | CG32195-RB | 281..1424 | 9..1158 | 5450 | 98.8 | Plus |
| CG32195-RA | 4876 | CG32195-RA | 281..1424 | 9..1158 | 5450 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18114823..18115282 | 341..800 | 2300 | 100 | Plus |
| 3L | 28110227 | 3L | 18114426..18114757 | 9..340 | 1660 | 100 | Plus |
| 3L | 28110227 | 3L | 18115344..18115677 | 798..1136 | 1295 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:13:20 has no hits.
FMO10060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:49 Download gff for
FMO10060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 270..1413 | 9..1158 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:56:21 Download gff for
FMO10060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 281..1424 | 9..1158 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:27 Download gff for
FMO10060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 281..1424 | 9..1158 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:27 Download gff for
FMO10060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18114426..18114757 | 9..340 | 100 | -> | Plus |
| 3L | 18114823..18115279 | 341..797 | 100 | -> | Plus |
| 3L | 18115344..18115698 | 798..1157 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:56:21 Download gff for
FMO10060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18107526..18107857 | 9..340 | 100 | -> | Plus |
| arm_3L | 18107923..18108379 | 341..797 | 100 | -> | Plus |
| arm_3L | 18108444..18108798 | 798..1157 | 95 | -> | Plus |
