FMO10066.5prime Sequence
740 bp (740 high quality bases) assembled on 2010-10-30
> FMO10066.5prime
CAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCCAGGCCCTC
AGGTGCTACTCGATGAGGCGGACCCCTGGCCCCGTCCTCGAGCTGAGTCG
CGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCCCGTGAGCT
GTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGCACTCCACA
GCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCTC
GATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTGG
AAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTGC
GGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGTA
CGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGGT
CCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGAC
TCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAGA
CAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACCC
TGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGAG
GGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCGC
CAAGGACATTGAAAAGCTGCTGGCAAGCTTTCTAGACCAT
FMO10066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHGPx-RD | 1014 | CG12013-RD | 114..827 | 9..722 | 3570 | 100 | Plus |
| PHGPx-RA | 803 | CG12013-RA | 104..616 | 210..722 | 2565 | 100 | Plus |
| PHGPx-RC | 1148 | CG12013-RC | 449..961 | 210..722 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3327860..3328185 | 210..535 | 1630 | 100 | Plus |
| 3L | 28110227 | 3L | 3327353..3327553 | 9..209 | 1005 | 100 | Plus |
| 3L | 28110227 | 3L | 3328249..3328439 | 532..722 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:09:39 has no hits.
FMO10066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:15 Download gff for
FMO10066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 80..795 | 6..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:34 Download gff for
FMO10066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 112..827 | 6..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:46 Download gff for
FMO10066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHGPx-RD | 112..827 | 6..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:46 Download gff for
FMO10066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3327860..3328183 | 210..533 | 100 | -> | Plus |
| 3L | 3328251..3328439 | 534..722 | 100 | | Plus |
| 3L | 3327351..3327553 | 6..209 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:34 Download gff for
FMO10066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3327351..3327553 | 6..209 | 99 | -> | Plus |
| arm_3L | 3327860..3328183 | 210..533 | 100 | -> | Plus |
| arm_3L | 3328251..3328439 | 534..722 | 100 | | Plus |
