FMO10068.5prime Sequence
725 bp (725 high quality bases) assembled on 2010-10-30
> FMO10068.5prime
CAGTCGACATGAGTATACCTACCGGAATTCCGAACTGTCCGCGCGGATTG
GAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGGTCGAGCT
GCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACGATCAAGA
ACGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGACTGCTGC
ACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGGGTCTTTGA
TAACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGCCTGCTCCT
CCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCTCGGCACCACCC
GGCAATGTTATCGGCACCATTGAGCAGGAGTGGTCCATCTGTTCGCCATC
CTTCCGCATCCTCAACCACGTGGGTGACACGGTGATGCGCATCGAAGGAC
CTTTCTGCACCTTTTCGCTCTGCGGCGACGTTGAGTTCAATGTTGTTTCG
CTCACTGGTGAGAAGATAGGCAAGATCTCGAAACAGTGGTCGGGCCTGGC
ACGTGAAATTTTCACGGATGCGGACTTCTTCGGCATCAATTTCCCACTGG
ACTTGGATGTGCGCATGAAGGCCGTTTTGCTGGGTGCCACATTCCTCATA
GATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATAGGCCCGG
AATGCTTGCAAGCTTTCTAGACCAT
FMO10068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scramb1-RC | 1640 | CG32056-RC | 348..1049 | 6..707 | 3495 | 99.9 | Plus |
| scramb1-RB | 1655 | CG32056-RB | 364..1062 | 9..707 | 3495 | 100 | Plus |
| scramb1-RA | 2049 | CG32056-RA | 760..1458 | 9..707 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10221609..10222093 | 493..9 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 10221393..10221552 | 651..492 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 10221076..10221132 | 707..651 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:09:42 has no hits.
FMO10068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:15 Download gff for
FMO10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RC | 342..1047 | 1..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:36 Download gff for
FMO10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RA | 760..1458 | 9..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:47 Download gff for
FMO10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RA | 760..1458 | 9..707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:47 Download gff for
FMO10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10221076..10221132 | 651..707 | 100 | <- | Minus |
| 3L | 10221394..10221552 | 492..650 | 100 | <- | Minus |
| 3L | 10221611..10222093 | 9..491 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:36 Download gff for
FMO10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10214176..10214232 | 651..707 | 100 | <- | Minus |
| arm_3L | 10214494..10214652 | 492..650 | 100 | <- | Minus |
| arm_3L | 10214711..10215193 | 9..491 | 100 | | Minus |
