FMO10069.5prime Sequence
1157 bp (1037 high quality bases) assembled on 2010-10-30
> FMO10069.5prime
CAGTCGACATGGACATGGATACCTTGCTACCTTCACCACCCGCAACGCCC
CCACTAAGGGAAAACAAGTTGGAAATCGTCGCCAAGGACGAACAACAGGT
GAACGAGAATCTGCTAAAGGCAAAGCTCAAGCTGGTGGCCCAAAAGAGTC
AGAAAAATGGAGGGATTATTACACCAAATCCATCGGACACGGAAGACGAG
GCTCCCGAAATAGCGGTTCCCAACAAGAAACCCCGTTTGGAACAACCTGC
TATGAGCATGACACCGCCGCCGGATCAAAAGCTGGACGATGATCAGAAAG
CGGAAAGGGTTAGCGTCATCATGCGGGTCAACAGTTCTGGCGCTGTCTCT
TCTAGTAGCCAAGACGAGAACTCATCTAGTTCCACCTCCTGCTGTAGTTC
CTCTTCCAACACAAACACAAGTACAAGTTCAGTACCACCCACTGTGGAGG
ACGACTATCCAGAGGCCAATGTGTGGCGCAATCTCAAGTTCAAAATGAAC
AGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGTACAAACACCCGAGAC
ACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAGCGGAATGCATCAAGG
AGGAGGAAATAAAACCTATTCTGACACCGATATATGTTAGCCCAGTAGCT
TCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGTGGCCGCCCAACAGAG
CCCCACACCCGTACCCAAAACGCCAACAATGTCCGAGGAGAAACTAACAA
CCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGAAGTCGCATCTACGAG
TGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAAAAGCAGTCATCTGAA
GCCCACCAGAGGGTTCACACCGGCGAGCGACCCTTTATCTGCAAGTGGGA
GAACTGTGACAAACGATTCTCCCGTTCCGATGAGTTGTCCCGACACAACG
GACCCACACCGGTGAAAAGAATTCCAGTGCAGCGTCTGCCAGAAGAATTC
ATGAGAGCGATCCACTGTCGAGCACGTCAAACGGCACACAGACAGCGAAC
GGAGTGAATCGACATGTCTCCCTGGCACAACAACATCAGCTTCGGAGCGC
TTCCCTCTGCATGCTCGCTCCATTGGACGAATGACCGCATCAAGCTAGTT
TCCTGCC
FMO10069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbt-RA | 2041 | CG4427-RA | 214..1348 | 9..1124 | 5210 | 98.1 | Plus |
| cbt-RC | 2361 | CG4427-RC | 603..1668 | 78..1124 | 4865 | 98 | Plus |
| cbt-RB | 3243 | CG4427-RB | 1485..2550 | 78..1124 | 4865 | 98 | Plus |
| cbt-RC | 2361 | CG4427-RC | 214..284 | 9..79 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 477195..478204 | 1076..78 | 4550 | 98.3 | Minus |
| 2L | 23513712 | 2L | 479405..479475 | 79..9 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:09:46 has no hits.
FMO10069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:16 Download gff for
FMO10069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 201..1347 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:38 Download gff for
FMO10069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 207..1353 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:49 Download gff for
FMO10069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 207..1353 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:49 Download gff for
FMO10069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 479407..479481 | 1..77 | 94 | | Minus |
| 2L | 477134..478204 | 78..1130 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:38 Download gff for
FMO10069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 477134..478204 | 78..1130 | 97 | <- | Minus |
| arm_2L | 479407..479481 | 1..77 | 94 | | Minus |
