FMO10071.5prime Sequence
1094 bp (997 high quality bases) assembled on 2010-10-30
> FMO10071.5prime
CAGTCGACATGCGTGTCTCCTCGCTGTTCGTTGTGTGCGTGGCCTCCCTG
GTGGCCACCACTTTGGGTCGTCCTGAGCCCCCATCCCCGTACTCCTACCA
CGGATTGCCTCAGCAGCAGAGCCAGCGGGCTTTGCCACTCAATGCTCACC
CCGTTCCCCCGCAGATTTACCAGCCTCTGCCCCAGGAGCAGTCGTTTGCC
AACTTTGCACCGCCCCAGCAGACCTACTTGCCACCCCAAATGCATCTGGA
TGCCATCGAGCAAGTGGCTCCCACTGCCGCCGCCGCTGAGCCCCTGAATG
CCTACGATGACAGCTACAACATGGCCCACCGCCTGTCCGGAGTGCAGCAT
GCCAGTGGCTACAACAATGGCCCCCAGGAGACCAAGGTGCACAAGCACAT
CTACGTCCATGTGCCGCCAAAGGACTTCGAGGAGGAGGATGCCATCCAGA
CCCGAGTTCACCACCAGCAGGGACCCAAGCAGAAGCACTACAAGATCGTG
TTCATCAAGGCACCATCTGCTCCGGCTATCCGTCAGCCAGTTGTGCCACC
ACCACCCCAGAATGAGGAGAAGACTCTGATCTATGTGCTGCACAAGAAGC
CCGAGCAGGAGCAAGATATCGTGATCCCGACGCCACCACCCACCAAGCCA
TCGAAGCCAGAGGTTTACTTCATCAAGTACAAGACCAAGAAGGACGAGGC
CCCCGTCTATGGACCCCCACCTGCAGAGATGGAGCCCCGTCAGGCCACCG
CCGAGGATTTCGCTCCATTGGCTGAGGTCGCCGATGTCCTGCCACCCACC
ACCCTGGCTCCTGCTCCCGAGCCGGAAGTAGAGCAGCCAGCCATTCCCTC
CGCGGTCTACGGACCACCCACTGCAGCTGCCTATACTGGTGAGGAGGTTC
AGACCACCTTGTCCGCTCCTGCCACAGTATTCTGCCCCCTGCACCGCTCC
CGCCGCCCTGGGCATTGAGGAGCCCTCATGGGGACCCATCGTGGTGGAAG
AAAAACCCGAGACACGACATGGGTCCTTCCCTGAGCTGCCACCAGCTAAG
GTCCTCCTCAACCCATTATTCCCTTAGAAGCTGGACGCAGGATT
FMO10071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlC-RA | 1396 | CG14254-RA | 103..1179 | 9..1083 | 4910 | 97.6 | Plus |
| TwdlT-RA | 1607 | CG5812-RA | 665..879 | 480..694 | 385 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26995284..26996153 | 144..1011 | 4070 | 98.6 | Plus |
| 3R | 32079331 | 3R | 26994934..26995069 | 9..144 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 27050140..27050276 | 558..694 | 370 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:13:41 has no hits.
FMO10071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:53 Download gff for
FMO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 92..1164 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:56:29 Download gff for
FMO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 96..1168 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:34 Download gff for
FMO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 96..1168 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:34 Download gff for
FMO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26994927..26995069 | 1..144 | 97 | -> | Plus |
| 3R | 26995285..26996214 | 145..1072 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:56:29 Download gff for
FMO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22820649..22820791 | 1..144 | 97 | -> | Plus |
| arm_3R | 22821007..22821936 | 145..1072 | 97 | | Plus |
