FMO10078.5prime Sequence
970 bp (970 high quality bases) assembled on 2010-10-30
> FMO10078.5prime
CAGTCGACATGGCCCGCATCGTTGAAAGCAATTTTGTGCCACTCGCCGTG
GGTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAA
TAAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGC
GCACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAG
GAGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAA
GCAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCA
CCATCGACAATGAGCTAATAATTCGGCCATACACTCCGATATCGTCTGAT
GAGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTC
GCATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGC
TCGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAA
TATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCC
AAAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCA
TTACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAG
GATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACAT
TCTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGT
TCAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGC
GTTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTTCCGGCCAA
GGACGATACCATTGTGTTGCTTTGCGGCCCACCACCCATGATTACTTTGC
CTGCATCCGGCGCTGGACAGCTTGGCTACCATCCGGACACCCGTTTGCCT
ACGCAAGCTTTCTAGACCAT
FMO10078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RF | 1460 | CG5946-RF | 348..1296 | 8..952 | 4630 | 99.5 | Plus |
CG5946-RB | 1686 | CG5946-RB | 286..1234 | 8..952 | 4630 | 99.5 | Plus |
CG5946-RA | 1224 | CG5946-RA | 135..1060 | 31..952 | 4515 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11818254..11818907 | 686..33 | 3270 | 100 | Minus |
3L | 28110227 | 3L | 11817154..11817318 | 946..785 | 660 | 97.6 | Minus |
3L | 28110227 | 3L | 11818086..11818189 | 788..685 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:10:14 has no hits.
FMO10078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:20 Download gff for
FMO10078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 261..1219 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:53 Download gff for
FMO10078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 279..1237 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:59 Download gff for
FMO10078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 279..1237 | 1..956 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:59 Download gff for
FMO10078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11817144..11817316 | 787..956 | 95 | <- | Minus |
3L | 11818088..11818187 | 687..786 | 100 | <- | Minus |
3L | 11818254..11818907 | 33..686 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:53 Download gff for
FMO10078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11810244..11810416 | 787..956 | 95 | <- | Minus |
arm_3L | 11811188..11811287 | 687..786 | 100 | <- | Minus |
arm_3L | 11811354..11812007 | 33..686 | 100 | <- | Minus |