FMO10080.5prime Sequence
1139 bp (1036 high quality bases) assembled on 2010-10-30
> FMO10080.5prime
CAGTCGACATGAAGCTCGGATTTCTGGGGCTTTTTGGCATGGTGCTCATG
ATCATGTTCTACGAGGGAGCAGAAGGGTATACCGTCAATGAGCTGCGCGA
TGTCCTGGGGATCTATGTCGATTATCCAACACTGCGCAGGTGGTACGAGG
ATGTCCGAGCTTATCACTATTTAAATTCGGAAAACACAAAACTGTTTTCG
CTGCGTTACGCTTACTACGACGACGTAGGAGATTTAGAACTCGTGAAAGG
GTACAACAGTGTAGTCCTAGAAGGAGTAGGAGAAGGAAATGTGGTTCTTC
GAGAGGGTCGGCCAAGGGGTGTGGACTTCGACCAGGGGGCGAGTATAATA
ATCAACGACGATATCGACAAAGCCTCTCATGCGAAAATCTTCAGTTCTTA
TAGCCGTCGTTCGTTCAATAGTACAGTAACTGTGCTGGGGATTACTGTTA
GCTACTTTAAGGCCAAATGGAAGTATCCATTCGATAAGTCCCAGACGAAA
GTGGAACAGTTTTACAACGACGGCGGCTCGCCGGCAGGTAAGGTGGAGAT
GATGGTGCAAACGGGGAAGTATGCCTACGTCAATAATGTAAAGGGTCTGC
AAGCGGATGTCCTGGAGCTACCTTTTGGGGAACATGAGCTAGTAATGATC
GTCTTACTGCCGAAGTCATCCCAGGGAGTTAACCTGGTGCTCTACCAATT
GAAGAACCTGGGACTACATCGCCTCCTTGAGAAACTCGAGGCCTCCAAGA
ATGAAACTGATGTAGAAGTCAAGCTTCCCAAGTTCGATACGCGATCCGTA
CTTTCACTCGAAGATACCGTATATGACGCTGGACTAACGGATCTGAGGAC
GACTTCGCAGATCTAGATAAATTGCTGATTGCTATCGGTCACAGAGGTGC
GTGCCTCACCCTCTACCACCAATTCGCAGGATCGTCGTAGATGAGAGGGT
TTGCCTAATGCTGTTCGCAGAAGTCTTCTGGAAAAAATAACATCAAGTTC
ATGTAAACAGTCGTTGCATACCTTGTCTACAAAAGAAACACAATGCTCAT
CCCTCGGAATCTTCCTGAGGGGAGATCCAGCAGCTTTCTAGAACATCGTG
GCCGCGGCCAGTATGCTATCTAATCTAATCTATCTATCC
FMO10080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn77Bb-RA | 1161 | CG6663-RA | 35..1120 | 9..1080 | 5010 | 98.2 | Plus |
Spn77Bc-RB | 1430 | CG6289-RB | 241..1287 | 48..1080 | 4125 | 93.8 | Plus |
Spn77Bc-RA | 1440 | CG6289-RA | 251..1297 | 48..1080 | 4125 | 93.8 | Plus |
Spn77Bc-RB | 1430 | CG6289-RB | 40..79 | 9..48 | 185 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20321638..20321994 | 472..828 | 1785 | 100 | Plus |
3L | 28110227 | 3L | 20343497..20343851 | 472..826 | 1610 | 96.9 | Plus |
3L | 28110227 | 3L | 20321269..20321572 | 170..473 | 1520 | 100 | Plus |
3L | 28110227 | 3L | 20343128..20343431 | 170..473 | 1490 | 99.3 | Plus |
3L | 28110227 | 3L | 20321041..20321201 | 9..169 | 805 | 100 | Plus |
3L | 28110227 | 3L | 20322051..20322274 | 828..1043 | 725 | 95.5 | Plus |
3L | 28110227 | 3L | 20342939..20343060 | 48..169 | 445 | 91 | Plus |
3L | 28110227 | 3L | 20343910..20344086 | 828..1000 | 430 | 88.1 | Plus |
3L | 28110227 | 3L | 20342738..20342777 | 9..48 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:10:17 has no hits.
FMO10080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:21 Download gff for
FMO10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6663-RA | 25..1086 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:56 Download gff for
FMO10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bb-RA | 35..1096 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:00 Download gff for
FMO10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bb-RA | 35..1096 | 9..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:00 Download gff for
FMO10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20321041..20321201 | 9..169 | 100 | -> | Plus |
3L | 20321269..20321572 | 170..473 | 100 | -> | Plus |
3L | 20321640..20321993 | 474..827 | 100 | -> | Plus |
3L | 20322051..20322291 | 828..1056 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:56 Download gff for
FMO10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20314141..20314301 | 9..169 | 100 | -> | Plus |
arm_3L | 20314369..20314672 | 170..473 | 100 | -> | Plus |
arm_3L | 20314740..20315093 | 474..827 | 100 | -> | Plus |
arm_3L | 20315151..20315391 | 828..1056 | 94 | -> | Plus |