FMO10083.5prime Sequence
1134 bp (1042 high quality bases) assembled on 2010-10-30
> FMO10083.5prime
CAGTCGACATGCATAACTCCCTGGTGACCAAGTTGCTGCTGCGGCTTTTG
CTGCTCTTCGCCTTGTTGACCGGCGCCTCCATTGTGGTGCTCACAAAGTG
CGGATTCGATGAACTGACGACGAGGGAAACTCAAGCCAATAATCCGAGTG
AATCCAGCGGATTCAGTTACACCTTAAGCGAACGAGAGGCGGAAATTGAG
CGGCTGAAACAGGAAGTCCTGGCTCTCCGCACTCAAATCCTCTTTCTACA
GAATAATCGCAGCACTGCCAAGCCATCAAATGGCAGTCTTCAATTGCAAG
AAACCACCGCGGGGCCACCAACTGCACCACTGGGTCACCATTACGACTGC
AGCAGCTATATTCGCAAGCAGGTGGGCGCCGCAGAAATTCTGCATGGACT
GCCGCTGAACAACGAGTACGAGCTGATACCCTACAATCACTTCACCTTCA
CGCGAGTATATCCCATCGACTTGGGCCTGGGAAAGCGCGTGGTGGAGAAG
CCCATCGGTTATCGACGACGTGACCTCATCGAGGCGGTAAACAAGGCGCT
GGAGAGCCTGAACAGGAATCACTCAGCGAGAATACGAGCCAAGGGAGCTG
GTTCTGCAGCGGCTTACGCCTCGGATGTGATCAAATACACCCTGGATGAC
TTTATCGAGGGCATATACCGCAACGAACCCACCACAGGCACCCAGTACGA
GCTGTACTTCCAGAGTGTCAAGCACCAGGCGAGTCCAGTGCGGAGAGCCC
TGGTCATGCGACCATTTGCTCCTCTGCAAACGGTGCAGCTATCGGAGCTA
TCTTCCAGTGTGGATAATAGTGGTGCCCCTCCAAGTCATAGTCCGCCCAT
AATCCACGTGATACTACCGCTGGCTGGACGTCTGCACAGCTTTCGCGGCT
TCCTGCAGATGTTCGCCAAGCTAGAGGATCGTCGCCTGAGCTTATTGTGG
TGTACTTTGGAACCAGTGGATTGAGCAGCTAGGAGCCTGGCTGGACGATC
CCAAGGACTCAGTTTTGGCACCTCATGAAACTTTCAGTAGGGCCAAGCTT
TAGACTGGGGAGCGGAACCATTCACCCGCCTGAGAGACTGCCTGTCTCTC
ATGTGGCGACGTGACATAATGTCGAACAAGTTCT
FMO10083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12913-RB | 2523 | CG12913-RB | 250..1328 | 9..1079 | 5075 | 98.7 | Plus |
| CG12913-RA | 2002 | CG12913-RA | 250..1328 | 9..1079 | 5075 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10252987..10254025 | 9..1042 | 4885 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-26 15:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3983..4015 | 127..159 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6880..6940 | 69..9 | 116 | 65.6 | Minus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 667..716 | 83..34 | 114 | 74.5 | Minus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8549..8598 | 83..34 | 114 | 74.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2610..2646 | 68..32 | 113 | 78.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6860 | 68..32 | 113 | 78.4 | Minus |
FMO10083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:17 Download gff for
FMO10083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12913-RA | 214..1296 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:42 Download gff for
FMO10083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12913-RA | 250..1332 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:52 Download gff for
FMO10083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12913-RA | 250..1332 | 9..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:52 Download gff for
FMO10083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10252987..10254031 | 9..1048 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:42 Download gff for
FMO10083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6140492..6141536 | 9..1048 | 99 | | Plus |
