Clone FMO10084 Report

Search the DGRC for FMO10084

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:100
Well:84
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1287-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10084.5prime Sequence

1120 bp (1019 high quality bases) assembled on 2010-10-30

> FMO10084.5prime
CAGTCGACATGCTTTTGGCCCGTTTAAACCATGTGCTGTCAGGACGACCG
ATGCGCCTTTTGGGCCAGTCTGGATGTCCTCGCCTGTGGAGCTCAGCCCA
TGCGCAGATGAACAGTAATTCCTTAAGAACACCTTCCTTGGCTCAAGGAA
AGTCAGTGATTCCTAAAAGGAATATGCAAGAACTTGGGATGAGAAAGTAT
TCCAGGGAGTCGAGAGATCGCGATCGTTCCCAACTGGAGAGTCGAACCAG
AGGTCCTTCCCTCAAGGAGCGCATGATGGGACCCCCCAGTGAAAATGCTT
ACTCCATGGGCAAGGGAGCGGCGGCTGGAGCGGCTCTGATGGGTCTCGTG
GGTCTGTGCTACTATGGTCTGGGCCTTGCCAATCAACCGAGTATCTACGA
CCACTCGATGGTGTGGCCCCAGTACGTGAGGGATCGTATTCATGCCACCT
ATGCCTATTTCGGAGCATCCTGTGGTGTAACAGCTGCTTCAGCCGTTGCC
TTTTTCCAATCGGATGCCATGATGGCTCTGATGACGCGTTCTGGATGGGT
TGCCTCATTGGTTACCCTGGGACTGGTAATGCTCAGTGGATCCATTGCAC
AAGGCCTAGAATATCAGCCGGGATTCGGAGCCAAGCAGCTGGCCTGGCTC
GTCCACTGTGCCGTTCTGGGAGCTGTCCTGGCACCCATGTGCCTCCTGGG
TGGACCCATTTTGACCAAGGCCCTTTTGTACACCAGCGGAATCGTGGGTG
CCCTGTCCACCGTGGCCGCTTGTGCCCCGAGCGAAAAGTTCCTGCATATG
GGCGGACCGCTGGCCATTGGATTGGGCGTGGTCTTCGCCTCCTCGCTAGC
CTCCATGTGGTTGCCGCCCACTACTGCAGTGGGGGCGGGACTGGCCAGCA
TGTCGTTGTACGGCGGACTGATTCTGTTCAGCGGATTTCTTCTGTACGAT
ACCCAAAGGATCGTAGTCGGCGGAGTTGTATCCCAGTACAGTAAATCCCT
ACGATCCAATTATCATGCCCTGCCATTACATGATGCGCTCACATCTTTAA
CCGCCATCGCCAATAATTTGGCTGGGGACCCAACAGGAGACGCAGCCTTT
CTGAACATTCGTTCGGCGCG

FMO10084.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1287-RA 1426 CG1287-RA 129..1214 4..1080 5065 98.4 Plus
CG2076-RB 1491 CG2076-RB 907..1307 615..1010 575 77.1 Plus
CG2076-RA 1319 CG2076-RA 735..1135 615..1010 575 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7501224..7502248 1022..4 4865 99.2 Minus
X 23542271 X 11091354..11091610 615..871 505 79.8 Plus
Blast to na_te.dros performed on 2014-11-26 15:09:59 has no hits.

FMO10084.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:18 Download gff for FMO10084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1287-RA 125..1219 1..1086 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:44 Download gff for FMO10084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1287-RA 125..1219 1..1086 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:53 Download gff for FMO10084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1287-RA 125..1219 1..1086 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:53 Download gff for FMO10084.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7501158..7502248 1..1086 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:44 Download gff for FMO10084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3326880..3327970 1..1086 97   Minus