FMO10085.5prime Sequence
834 bp (834 high quality bases) assembled on 2010-10-30
> FMO10085.5prime
CAGTCGACATGTCGCAACAGCGCTCCACAGAGCAGATTGCAGCTAGCAAC
AACAACACCAGCGATGTAATAGCGCTGGACGACGACGAGGATACGGATGT
GCAATTCGTTGCAGCTCTGCGTCCCACCGCACCAGTCATCGATCTTTGCG
TCTCGCCCTCCACTTCTGCTGCTGCTGCTGCGGCGGCGGCAGCTGCAGCC
CACTCAGGAGGCGGAAGTGGCGAGGATCCGGCGGTTGGATCCGCATCTGG
AGCTGCTGCTTCGGATACCGATTCACTTGCTTCTTCGCCTGACGAAGGAG
CGTTAGCCACCGGTGTGGATGCAGCGGCAGCCGTTTCTGGCGAAGATTCC
CCCTCTGCAGCGGCCGCTGCCTTGGAGTGTCCCATCTGTTTGCAAACCTG
CATCCACCCAGCTCGTCTCCCCTGTGGCCACATCTTCTGCTTTTTGTGCG
TGAAGGGTGTTGCTTATAAGAACCGCCGTTGTGCTATGTGCCGTCGCGAG
ATTCCCGCCGAGTTCCTGGACCATCCCCAGCTGGTGAATGGCATTGAGGA
CATCTGCACCACTCGCGCGACCGAGGACGGCTTCCAGTGGTATTACGAGG
GAAGAAACGGTTGGTGGCAGTACGATGACCGCACTAGTCAGGACATCGAA
GATGCCTTTAAGAAGGGCGACAAATCCTGTACAATTTTGGTAGCCGGCTA
CGTCTACATTGTGGACTTGGAGCAGCTAGTCCAGCAGCGCCAGAATGAGC
CCACTCGCTGCCGGAGGGTTAAGCGAGACCTAGCCACCATACCCAAAAAG
GGGGTGGCGGTCTGCGGAATCGAAAGCAACCAGG
FMO10085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-RG | 3862 | CG8786-RG | 149..975 | 8..834 | 4075 | 99.6 | Plus |
| CG8786-RC | 1667 | CG8786-RC | 149..975 | 8..834 | 4075 | 99.6 | Plus |
| CG8786-RB | 1963 | CG8786-RB | 149..975 | 8..834 | 4075 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19642352..19642668 | 324..8 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 19640094..19640319 | 834..609 | 1020 | 98.7 | Minus |
| 3L | 28110227 | 3L | 19641063..19641220 | 611..454 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 19641893..19642026 | 456..323 | 670 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2467 | 332..167 | 112 | 53 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2864 | 260..160 | 110 | 59.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1096 | 198..163 | 108 | 77.8 | Minus |
FMO10085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:22 Download gff for
FMO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RC | 138..973 | 1..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:59 Download gff for
FMO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RB | 140..975 | 1..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:04 Download gff for
FMO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RB | 140..975 | 1..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:04 Download gff for
FMO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19640094..19640318 | 610..834 | 98 | <- | Minus |
| 3L | 19641065..19641218 | 456..609 | 100 | <- | Minus |
| 3L | 19641894..19642024 | 325..455 | 100 | <- | Minus |
| 3L | 19642352..19642677 | 1..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:59 Download gff for
FMO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19635452..19635777 | 1..324 | 99 | | Minus |
| arm_3L | 19633194..19633418 | 610..834 | 98 | <- | Minus |
| arm_3L | 19634165..19634318 | 456..609 | 100 | <- | Minus |
| arm_3L | 19634994..19635124 | 325..455 | 100 | <- | Minus |
