FMO10086.5prime Sequence
1163 bp (1033 high quality bases) assembled on 2010-10-30
> FMO10086.5prime
CAGTCGACATGACCGTGACCGCCACACCGATGCCGGACAATCTGCGGGTG
AAAGCCTTATCCGAGTACCGAAAGAAGTTGCTAGAGCACAAGGAAATCGA
GGGACGCCTCAAAGAAAAGCGCGAGGAGATCAAGGATCTGACCAAGCTGT
ACGACAAGTCGGAGAACGATCTAAAGGCCCTGCAGAGCGTGGGACAGATC
GTTGGTGAGGTGCTGAAGCAGCTGACCGAGGATAAATTCATTGTGAAGGC
CACCAATGGACCCCGCTACGTGGTCGGCTGCCGCCGGCAGCTGGACAAAG
CCAAGCTGAAGTCCGGAACTCGTGTGGCCCTCGACATGACCACACTGACC
ATTATGCGCTACTTGCCGCGCGAGGTGGACCCACTGGTGTACAATATGTC
GCACGAGGATCCCGGGGATGTCACCTACTCGGCCATCGGCGGCCTAACCG
ACCAAATTCGCGAGCTGCGCGAAGTGATCGAGCTGCCCCTACTGAATCCG
GAGCTCTTCCTGCGCGTCGGCATCACGCCACCGAAGGGTTGTTTGCTGTA
CGGACCTCCTGGCACCGGCAAGACCCTGCTGGCCCGTGCAGTGGCCTCCC
AGCTGGACGCCAACTTCCTCAAGGTCGTGTCCTCGGCGATTGTCGACAAG
TATATTGGCGAGAGTGCGCGTCTCATTCGCGAGATGTTCAACTATGCCCG
CGACCATCAGCCCTGCATCATTTTCATGGACGAAATCGACGCTATCGGTG
GTCGGCGCTTCTCCGAGGGCACCTCTGCCGATCGCGAGATCCAGCGCACC
CTGATGGAGCTGCTCAACCAGATGGACGGCTTCGATTCGCTTGGCCCAAG
TCAAGATGATCATGGCAACCAATCGTCCGGACACCCTCGATCCTGCCCTT
CTGCGTCCGGGTCGCTTGGACAGGAAGATCGAGATTCCGCTGCCCAACGA
GCAGGCTAGTTGGAAATTCTCAGGATTCACGCACTGAAGATCGCCAAGCA
CGGCGAAATCGACTACGAGCCATTGTCAAGCTGTCGACACCTTTAATGGC
GCCTGATCTGCCGTATTGTCTGCACGAGGCGGGTCTCCTTGGCATTCTTG
GCGGGAGCGGGAGTTACCGCTCATTCCAGAAGAACTTTTGAGGCAGAGTG
CCTAAGGGTTCAG
FMO10086.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt4-RB | 1465 | CG3455-RB | 123..1227 | 9..1114 | 5235 | 98.6 | Plus |
| Rpt4R-RB | 1502 | CG7257-RB | 336..1169 | 149..982 | 1530 | 79.2 | Plus |
| Rpt4R-RA | 1391 | CG7257-RA | 225..1058 | 149..982 | 1530 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6290055..6290775 | 959..238 | 3560 | 99.9 | Minus |
| 3L | 28110227 | 3L | 11942247..11942724 | 149..626 | 785 | 77.6 | Plus |
| 3L | 28110227 | 3L | 11942791..11943119 | 621..950 | 730 | 82.1 | Plus |
| X | 23542271 | X | 6290839..6290958 | 237..118 | 600 | 100 | Minus |
| X | 23542271 | X | 6291015..6291123 | 117..9 | 545 | 100 | Minus |
| X | 23542271 | X | 6289786..6289925 | 1097..959 | 385 | 93 | Minus |
| X | 23542271 | X | 11126270..11126437 | 777..945 | 240 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:10:31 has no hits.
FMO10086.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:22 Download gff for
FMO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RA | 121..1227 | 9..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:01 Download gff for
FMO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RB | 123..1229 | 9..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:05 Download gff for
FMO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RB | 123..1229 | 9..1117 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:05 Download gff for
FMO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6289784..6289925 | 960..1101 | 91 | <- | Minus |
| X | 6290055..6290775 | 238..959 | 99 | <- | Minus |
| X | 6290839..6290958 | 118..237 | 100 | <- | Minus |
| X | 6291015..6291123 | 9..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:01 Download gff for
FMO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6183817..6183958 | 960..1101 | 91 | <- | Minus |
| arm_X | 6184088..6184808 | 238..959 | 99 | <- | Minus |
| arm_X | 6184872..6184991 | 118..237 | 100 | <- | Minus |
| arm_X | 6185048..6185156 | 9..117 | 100 | | Minus |
