FMO10090.5prime Sequence
1093 bp (1001 high quality bases) assembled on 2010-10-30
> FMO10090.5prime
CAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGACGCAGACG
CCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAGAAGACCGA
GGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCACGGGCACCG
ATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCATGCTGCCG
GGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAGATCTTCCG
GTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGATCCCTCCA
CCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTAAGAGGAAC
GGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCCTTGACCGA
AGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTACGTCAATG
TGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATCACGACATT
GACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCCATGTTGGA
ACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGTGACCGTCG
AGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCCGCCAAAAC
AATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATGAAGCTGTC
CGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGACTATCCCG
AACTGGAGCACAACAACATGATTATCGACACACCTGCATGCAGTCCGTGT
CGAATCCTCACCAGTTCGACGTGATGAACATGACCAATCTGTACGGCACC
ATCGTGTCCAATGTTCTTTGCGGTTTGATGGGCGGAGCTGGCCTCATATC
CGGCAGGAACTACGATGACCATTACGCCATCTTTGACCCTGGCACCCGTA
ACACCCGGACCGCCATTGCCGGCCAGAATACCGCCAACCCTGTGGCCATG
ATCAGTGCCATATCGGATATGTTGAACATCTGGTCACAGGAGAACGCCAT
GTACATTCAGAGGCGTCTCAACATTGTCACATGCCCTTCCACG
FMO10090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5028-RD | 1742 | CG5028-RD | 122..1178 | 8..1060 | 4975 | 98.5 | Plus |
| CG5028-RC | 1608 | CG5028-RC | 122..1178 | 8..1060 | 4975 | 98.5 | Plus |
| CG5028-RB | 1934 | CG5028-RB | 122..1178 | 8..1060 | 4975 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25681265..25682045 | 143..922 | 3840 | 99.7 | Plus |
| 3R | 32079331 | 3R | 25681121..25681199 | 66..144 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 25682105..25682209 | 923..1027 | 375 | 90.5 | Plus |
| 3R | 32079331 | 3R | 25680966..25681024 | 8..66 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:13:59 has no hits.
FMO10090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:55 Download gff for
FMO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RC | 149..1194 | 8..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:56:37 Download gff for
FMO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 122..1167 | 8..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:40 Download gff for
FMO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 122..1167 | 8..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:40 Download gff for
FMO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25680966..25681023 | 8..65 | 100 | -> | Plus |
| 3R | 25681121..25681198 | 66..143 | 100 | -> | Plus |
| 3R | 25681266..25682045 | 144..922 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:56:37 Download gff for
FMO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21506688..21506745 | 8..65 | 100 | -> | Plus |
| arm_3R | 21506843..21506920 | 66..143 | 100 | -> | Plus |
| arm_3R | 21506988..21507767 | 144..922 | 99 | -> | Plus |
