FMO10092.5prime Sequence
1124 bp (1013 high quality bases) assembled on 2010-10-30
> FMO10092.5prime
CAGTCGACATGACGGCCGAGACAAACAAAGGACCCGTTCTGGGAATGAGG
CATGTCCAGGCGCTACTGATCTTCCTCAATATAACTACCGTATTCATAGG
CCGCCTAAATGTGGGCGTGTCTGTGGTGGCAATGACCAATGCGGAAACCA
CGAACCCGAACTTTCCGGAATACGATTGGACGGAGGCAGAGAAGTCGTAC
ATTCTCTCCAGTTTCTTTTGGGGCTACATCCTAACGCAATTCCTTGGAGG
TTATCTCTGCAAGCGCTTTGGAGTCAAGAGTGTAATGTTTTGGGGTGTCT
TCGGATCTGGTGTCTGCAGTGCTTTGACGCCGCTGTTCATCGGATTTGGA
GAATGGCAGGCCTACTGTGGAATTCGAGTTCTAATGGGATTGGCCCAGGG
AGTGGTATTCCCCTGCATTCATCAGCACCTGGCTAAATGGTCACCGCCCG
AGGAAAGAAATCGGTTGGGAGCTCTGAGTCACACTGGAATCGAGTGCGGC
AATGTGAGTGCCATGTTCCTGAGCGGAATGATAGCCAAGAGCTCCCTGGG
ATGGCCCGGAATCTCATATGTCTCGGCTGGAGTGGCCTTCTTCTGGTGTA
CATTATGGTTCGTCTTCGCTGCCAACCATCCTACGGAATCTCGTTTCATA
GGAGAGAACGAACTGATCTATATTGAGTCGTCTCTAAAGCACAATGAGTC
ATACCACGCTACCATTATACCCATTCCCTGAAGGCAATTTGGACGTCGGC
ACCATTCCTGGCCCTGCTCATAGTACGATGCGCTGAGAACTGGGGACTGA
GCACTCTGCAGGCCGAGATCCCATCCTATATGAACGGAGTCCTCGACATG
GACATGAAGAGCAATGCGTTCTTCTCGGCACTCCCATTCTTGGCCATGTG
GTGCATGTCGTATATTTACCTAGTCGTAGCCGATGTGCTCTTGGGCAAGA
CTCGTGTCCTTGACGATTTTGAAAAAGACTACACTCCATTGCCTCTGGAT
TCTGCTGCCACTTTGGTGTAATGGCTTTTGGAAAAGAACAAGAACTCCCG
ATGCTCTGCATGACCATACGTGTGGCGTGATCTGCTCAACATGGCAGGTT
TACCAATGATCATCGAATTCCGCG
FMO10092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9825-RA | 1543 | CG9825-RA | 76..1162 | 9..1080 | 4930 | 97.8 | Plus |
| CG12490-RB | 1647 | CG12490-RB | 54..967 | 9..921 | 2425 | 84.8 | Plus |
| CG30265-RB | 1622 | CG30265-RB | 58..963 | 9..913 | 1370 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22837915..22838773 | 167..1018 | 3930 | 99.1 | Plus |
| 2R | 25286936 | 2R | 22835185..22835940 | 167..921 | 1600 | 81.1 | Plus |
| 2R | 25286936 | 2R | 22833119..22833866 | 167..913 | 1290 | 78.5 | Plus |
| 2R | 25286936 | 2R | 22834990..22835129 | 29..168 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 22837720..22837859 | 29..168 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 22841622..22841790 | 733..901 | 275 | 77.5 | Plus |
| 2R | 25286936 | 2R | 5962261..5962374 | 937..824 | 195 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:14:07 has no hits.
FMO10092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:56 Download gff for
FMO10092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9825-RA | 74..1103 | 9..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:56:41 Download gff for
FMO10092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9825-RA | 76..1105 | 9..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:45 Download gff for
FMO10092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9825-RA | 76..1105 | 9..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:45 Download gff for
FMO10092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22837436..22837457 | 9..30 | 100 | -> | Plus |
| 2R | 22837722..22837858 | 31..167 | 100 | -> | Plus |
| 2R | 22837916..22838770 | 168..1015 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:56:41 Download gff for
FMO10092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18724959..18724980 | 9..30 | 100 | -> | Plus |
| arm_2R | 18725245..18725381 | 31..167 | 100 | -> | Plus |
| arm_2R | 18725439..18726293 | 168..1015 | 99 | -> | Plus |
