FMO10094.5prime Sequence
1135 bp (1042 high quality bases) assembled on 2010-10-30
> FMO10094.5prime
CAGTCGACATGCGCACAGTGCTGTTGAGCAAACACGACGAGCTGTACCTG
GAGAAATGCGCACAGGAGAACCAGTTCTCGTACGGGATAATCGTGGGCCA
TCAAGCGGATCTCACCAAGAGCGTGGTGGTCCACCTGGCCAGGAACAACG
AGGAGGATGCGGATCTGGAGGACCTGTCGGAGGTCCGGCTCACCATCTCG
GACATCAACTCACAGGCATTGGCCTCCCAGTGGCTGAGCGCCAGCAAAAT
GTGTCCCGGATCTTTTGACGTCATCGGAATCTTTGTGTCTTCAGTAAGAT
CCGATGTAGTAAACGAACAGAGCGCCGAATTTAAGAATGCCAAAAAGCTG
TTTTCAGATATTTACGATTTGCTCCTGAAAAGCAACAGCTCGTTTGGCGT
CTACACCACCGACATTGCACAGACTGATTTCGTATTCCTCTCGTATTCGC
TGGCCGACAAGAAAGTGCTCTGCAAGAACTACAGCTATGGCAACGGCGGC
ACTTTCACCAATATGGAGTTCCGGTTTGTGGACAAACCCTTCGAGTGGAT
TCAGCTGGAGTGCAGCTACGATTTCGATGATGTGCTGCCCATACTGGACT
CCTCGCGTCGCGTCAACATCGAAGACCAGTTCCAGAGTATGATAGTGTCG
GTGCGCAAGAACCTGCTCGCCAGTGAAGTATTCCTCCAAAACGAAGTTGT
CGAGGACACCATCGATCTGCAGGCCTATATCAAAAAGAAAAAGACGAAAG
TGGACAAGCTGCAACCGACATCGACAACAGGTGGCACGGCCACTGCCTCG
AGCAACACCACTGACTCCCTGCCGCGGCTTGCGTCCGAAGGATCATCGGA
GGCACTGAAACCATCCGGGCGAGCATCGTGCTCCCCATGAAATGCCAGCT
GAGCAAACCGACGGACATCAAGGTGCGCGAATTTAGTGGCACGCTGCACA
TGAGCGGCATTATTACCTTCAAAGGTATCTGCAATCCTCGAAACAGTATA
GCAGATGTTAGCGTTCTACGCGACGAATGTGCTCGTTCGCTGATACGCGT
ATCAAATGGTACTGCAATGGACTCACGATCAATTGTGACCATGAGCTCTG
TAATTATGGAGCCCCGAACGTGGGTTTCTCGACTG
FMO10094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10616-RC | 1838 | CG10616-RC | 110..1239 | 9..1126 | 5135 | 97.9 | Plus |
| CG10616-RA | 1689 | CG10616-RA | 110..1239 | 9..1126 | 5135 | 97.9 | Plus |
| CG10616-RB | 1737 | CG10616-RB | 643..1287 | 494..1126 | 2710 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12473185..12473772 | 494..1076 | 2465 | 96.9 | Plus |
| 3L | 28110227 | 3L | 12472022..12472197 | 102..277 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 12472707..12472832 | 368..493 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 12471837..12471929 | 9..101 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 12472546..12472637 | 276..367 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:14:11 has no hits.
FMO10094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:57 Download gff for
FMO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 67..1179 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:56:44 Download gff for
FMO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 100..1212 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:46 Download gff for
FMO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 100..1212 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:46 Download gff for
FMO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12471827..12471929 | 1..101 | 96 | -> | Plus |
| 3L | 12472022..12472196 | 102..276 | 100 | -> | Plus |
| 3L | 12472547..12472637 | 277..367 | 100 | -> | Plus |
| 3L | 12472707..12472832 | 368..493 | 100 | -> | Plus |
| 3L | 12473185..12473802 | 494..1102 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:56:44 Download gff for
FMO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12464927..12465029 | 1..101 | 96 | -> | Plus |
| arm_3L | 12465122..12465296 | 102..276 | 100 | -> | Plus |
| arm_3L | 12465647..12465737 | 277..367 | 100 | -> | Plus |
| arm_3L | 12465807..12465932 | 368..493 | 100 | -> | Plus |
| arm_3L | 12466285..12466902 | 494..1102 | 97 | | Plus |
