FMO10106.5prime Sequence
1131 bp (1011 high quality bases) assembled on 2010-11-05
> FMO10106.5prime
CAGTCGACATGAAGGCAGTACCCAGGACGCCGATGCGTGTCGTCCCGAAA
ACTCCGCGGGTGCATCAAACGGTGGAGAAACAGCGACGAGACACCTCCGA
CAAGGCCAGGGATCCAGTGAATGTGTTCTGTCGAGTGCGGCCACTACAAT
CCGACGCAGATCTCACCTCCCTAAGGGTCAAGAACTCCACGACGATCGCA
CTGAATCCGCAGGATCAGCTGCTGCAGCATCACAAGCCACACAACGGCGC
CCAGCGCGAGGTTCAGTACATATTCAAGCACGTTTTCCAGCCGGATGCCA
CGCAGCAGGATGTGTACGCAGCTGTGGCCCAGCCGTTGGTGGAGAACCTA
CTGAAAGGCCGAAACAGTCTGCTTTTCACCTACGGCGTGACTGGAAGTGG
AAAAACGTACACCATGACCGGCAACCTGCGACACCGCGGCATCATGCCGC
GCTGCCTGGACGTGCTCTTTCGCACCATTTCAGATTACCAGGCCAAGAAG
TTCGTCTTCAAGCCGGACAAGCTTAATGGCTTCGAGATCCTGTCCGAAGA
GGATGCGCTTTTGGAGCGCCAACACGAGATGAACCAGCGTTTTGCTGGCT
CAGGACGATTTGCCTTCAGGCACAAGGACTCGGATCCGGAAATTGCATCC
CAGGCCTCCGTGGAGCCAATTCCGCTGCTGGGTTTGGATGAGGACAACAT
GTACTCGGTGTTTGTCACCTATATTGAAATTTACAATAACAGCGTCTACG
ACCTCCTTGAGGACTCGGGTATACAGAAGACTTTGCAGAGCAAATCATTC
GTGAAGATGCCAATCGACACATGTTCGTCCACGGCGTCACAGAGGTGGAG
GTCAAGACCGTGGAGGACGCCCTCGAGGTCTTTCAATGGGCCAGAAGCGC
AAACGAATGGGACACACTGTTCTCAATGCAGAATCCAGTAAGAGTCACTC
GTGTCATATACGCTTGGTGCAGCGCCACTGATAGCCAGGGTGAGAAATGT
GGTCAGGACCGGCAACATCACAGTGAGTCAACTGTCCTTGGTGGATCTTG
CGGCAGTGAGCGATTCCTCAAGGAACAGAAACACGGTGTGCACTCGTGAG
GCGGGCACATTCAATAATTCGCTATGACCTG
FMO10106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pav-RA | 3207 | CG1258-RA | 143..1277 | 7..1128 | 5135 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4242948..4243707 | 20..779 | 3800 | 100 | Plus |
| 3L | 28110227 | 3L | 4243765..4244121 | 779..1123 | 945 | 90.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:51:28 has no hits.
FMO10106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:37 Download gff for
FMO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 135..1279 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:27 Download gff for
FMO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 137..1281 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:53 Download gff for
FMO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 137..1281 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:53 Download gff for
FMO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4242948..4243706 | 20..778 | 100 | -> | Plus |
| 3L | 4243765..4244131 | 779..1131 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:27 Download gff for
FMO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4242948..4243706 | 20..778 | 100 | -> | Plus |
| arm_3L | 4243765..4244131 | 779..1131 | 92 | | Plus |
