FMO10113.5prime Sequence
1163 bp (1023 high quality bases) assembled on 2010-11-05
> FMO10113.5prime
CAGTCGACATGAGCGTACGGAAGAAAACTTGGGTAAGATGTGCCTTCAGC
GAGATGAACTTGACCACCAGTCCTGCTCCTTCGGAATCCACGCCTGCGAA
GCGCACAAGAAGTGCAAGCAATGTGAGCAGCTCCAGAGTATCGAGGTCGA
GAACTCCAAGCATAAATACAAAGCCAATACAGATTCCGGACGTGGACTCA
GTCGATCTTACTGCCATGGATGATGACCAGGATGCGGACATCACTGTGCC
ACCGCCAGAAGTCAAAGAAAACTGGATGGAAAGCTTTGAGCCAGCCACCA
GCGACGATTTGGCGGTGCATCCAAAGAAGGTCGGAGAACTACGCGATTGG
CTGCGTCACTGCGAAGCGGTGCGCAAGAAGTTCCCGGCTCAAATGTGTCT
ACTTACCGGGCCCACTGGTGCTGGCAAAACCACCACGTTGCGAGTCCTGG
CCAAGGAGTTCGGCTACCAGCTGCAGGAGTGGATCAATCCTATCGATTGT
GAGGTGGTCAACACCTTGGGTGATCAAACGACTGGCGCCTCCTATGTGGG
CTCCCATCTGGAGGCCTTTAAAAGCTTTCTGCTCCGTGCCTCGCGATACA
AATCCTTGCTGGACTCGCAAAATAAGAGACTGCTTCTTGTCGAGGACTTT
CCCAACGTCCTGCTCAGCGATAAGGAGGTCAACTTTGAAGAGTTACTAGA
AGAGTACACGGCGTATGGCAAATCTCCCCTGGTGTTCATCGTTGCCGATG
CCAAATCTCGAGGATTGAATATCAGCTACCGCCTCTTTCCAGACCAACTG
AAGGCCAAACATCGCATCGAGCACATCAGTTTCAATGCTATTGCATCTAC
AATCATGCAAAAGTCAATGAAAACCTTCTGCTCCGTAATGCAGCAGAATA
AAGCTACTTACAAAGTGCCTCGACTGCTGTTGTGACTCAATAGTTGTCGG
TGCCCAGGGCGACATAAGAAATGCGTTAATTAATTTACATTTGAGCTCCT
TTAAAGGGAGTTCAGCCATGCCGACCAAACAGCTAATGTCATGTGGTTCC
GCAAGGTCGTTAGAAGAATAATGCAAGTACCTTTAAAGTCATTGTAAGAA
TGATCAATTACCTCTGATGCACGCACTGAAGAGAATAATCCTAGTTTATG
AGAGACAACATGT
FMO10113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad17-RA | 1823 | CG7825-RA | 49..1208 | 9..1158 | 5155 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14662403..14663081 | 700..22 | 3395 | 100 | Minus |
| 3R | 32079331 | 3R | 14661979..14662316 | 1036..701 | 1425 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:44 has no hits.
FMO10113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:40 Download gff for
FMO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad17-RA | 44..1187 | 9..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:37 Download gff for
FMO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad17-RA | 44..1187 | 9..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:01 Download gff for
FMO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad17-RA | 49..1192 | 9..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:01 Download gff for
FMO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14661865..14662316 | 701..1143 | 93 | <- | Minus |
| 3R | 14662403..14663079 | 24..700 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:37 Download gff for
FMO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10487587..10488038 | 701..1143 | 93 | <- | Minus |
| arm_3R | 10488125..10488801 | 24..700 | 100 | <- | Minus |
