FMO10114.5prime Sequence
1126 bp (1026 high quality bases) assembled on 2010-11-05
> FMO10114.5prime
CAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAGCTCGCCAG
GATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGCGAGGACGA
TACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATCCGACCACG
ATGAGATCTTCCTCAAGGGATTGCTGCGTAGTAACTCCAACACGCCCCAC
AAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCACTATTCCT
GCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCATCCGCAAGT
TCTCACCCTCGAGGCGCCTGGAGTCGCGAGAACTCGCCAAGCTTCTCGCC
CAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATAGGAGCACT
CTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCAACTAGAGA
TCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGGACGTCCTC
AACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTGCGCCGAGA
TCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATTCAAGCAGC
TGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAACAGAGCATG
CTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCCGTTCGCAC
TCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAATCTCACCC
TCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTCGCTATACT
TGCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGATTCCTTGCT
GCCATGCAGGATATTGGATTGCCCTTCAAGTCGGGCGACATTTTGCAGAT
CATCAACGTAAAGGATCCCAACTGGTGCAGCCCAGACATTACTGCCGAAT
CTGACAAATTGGACTCATACCATCCCAGAGCTGGAGGAGCGGCGCCAAGG
CCTTCGTGGCCCGAGGCGACTACGTTCACAAGATTGCATTTGCGAACAAG
AATTCTCCGAACGAAAGCGCAGACATGTACGATCTGTGGCCATTGCCGAG
TCGACAAGGCGGAACCTGCTTGCTCT
FMO10114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-RD | 2717 | CG9326-RD | 285..1402 | 9..1113 | 5050 | 97.9 | Plus |
vari-RE | 2535 | CG9326-RE | 285..1076 | 9..800 | 3945 | 99.9 | Plus |
vari-RB | 2610 | CG9326-RB | 285..1076 | 9..800 | 3945 | 99.9 | Plus |
vari-RE | 2535 | CG9326-RE | 1140..1465 | 801..1113 | 1105 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20791230..20791664 | 800..366 | 2175 | 100 | Minus |
2L | 23513712 | 2L | 20792113..20792267 | 366..212 | 760 | 99.4 | Minus |
2L | 23513712 | 2L | 20796653..20796758 | 114..9 | 530 | 100 | Minus |
2L | 23513712 | 2L | 20796037..20796135 | 212..114 | 495 | 100 | Minus |
2L | 23513712 | 2L | 20790622..20790720 | 898..801 | 445 | 99 | Minus |
2L | 23513712 | 2L | 20790408..20790558 | 1036..893 | 335 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:48 has no hits.
FMO10114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:41 Download gff for
FMO10114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 275..1411 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:39 Download gff for
FMO10114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 277..1413 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:04 Download gff for
FMO10114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 277..1413 | 1..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:04 Download gff for
FMO10114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20796037..20796134 | 115..212 | 100 | <- | Minus |
2L | 20796653..20796765 | 1..114 | 96 | | Minus |
2L | 20790391..20790552 | 899..1051 | 92 | <- | Minus |
2L | 20790622..20790720 | 801..898 | 98 | <- | Minus |
2L | 20791230..20791664 | 366..800 | 100 | <- | Minus |
2L | 20792114..20792266 | 213..365 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:39 Download gff for
FMO10114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20790391..20790552 | 899..1051 | 92 | <- | Minus |
arm_2L | 20790622..20790720 | 801..898 | 98 | <- | Minus |
arm_2L | 20796037..20796134 | 115..212 | 100 | <- | Minus |
arm_2L | 20796653..20796765 | 1..114 | 96 | | Minus |
arm_2L | 20791230..20791664 | 366..800 | 100 | <- | Minus |
arm_2L | 20792114..20792266 | 213..365 | 99 | <- | Minus |