FMO10118.5prime Sequence
1151 bp (1049 high quality bases) assembled on 2010-11-05
> FMO10118.5prime
CAGTCGACATGCTGACCAACTTCGAGTCGAAGTCGGCGAGGGTGAAGGGC
CTCTCCTTCCACCCTAAGCGCCCCTGGATCCTGGTCAGCTTGCACAGCGG
CGTCATCCAGCTGTGGGACTACCGGATGCACACGCTCCTCGAGAAGTTCG
ACGAGCACGACGGACCGGTGCGAGGCGTGGCCTTCCACCAGCAGATGCCG
CTCTTCGTCTCTGGCGGCGACGACTACAAGATCAAGGTGTGGAACTACAA
GCAACGCCGATGCATTTTTACCCTCCTGGCCCATTTGGACTATGTGCGCA
CGGTGGCTTTCCACCACGAATACCCATGGATTCTGAGCGCCTCCGACGAT
CAGACCATACGCATCTGGAACTGGCAGTCGCGCAACTGCATCTGCGTGCT
GACGGGCCACAACCACTATGTGATGTGCGCCCAGTTCCATCCCACGGAGG
ATCAGATCGTTTCTGCTTCACTCGATCAGACGGTGCGCGTGTGGGACATT
TCGGGGCTGCGTAAGAAGAACGTGGCTCCCGGGCCCGGTGGGCTTGATGA
CCACCTAAAGGGTCATCCGGGTGCCACTGATCTGTTTGGCCAAGCAGATG
CCGTGGTCAAGCACGTGCTCGAGGGCCACGACCGTGGCGTCAACTGGGCC
AGTTTCCATCCCACCCTGCCGCTGATTGTCTCCGGTGCCGATGATCGCCT
TGTGAAGTTGTGGCGCATGAACGAGTACAAGGCTTGGGAGGTCGACACCT
GTCGCGGTCACTACAACAACGTGTCCAGCGTGTTGTTCCATCCCAGGCAA
GACCTGATTCTCTCCAACGGCGAAGATCGCAGTATTCGCGTCTGGGACAT
GACCAAGCGCCAGTGCCTCTTTACATTCCGGCGGGACAACGAGCGCTTCT
GGATACTTACAGCGCATCCGACCCTGAATCTGTTTGCAGCTGGCCACGAT
GGAGGTATGGTGGTCTTTAAACTGAGCGAGAGCGTCCTGCATATGCTGTC
CACGGGAATATTTCTCTTACTACGTCAAGAACGTTTCCCTTCGCAACTGG
ACTTTAACCACCACTAAGGAAACCTGTGGTTATGCAGCCTCCGACCAGCA
GTTCGCCGGGTTAAGCAATGTCGTTACCACAGACACTGAACGCCGTCTTA
T
FMO10118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaCOP-RA | 4078 | CG7961-RA | 242..1378 | 8..1146 | 5240 | 98 | Plus |
alphaCOP-RB | 3970 | CG7961-RB | 134..1270 | 8..1146 | 5240 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1644010..1644958 | 956..8 | 4745 | 100 | Minus |
3L | 28110227 | 3L | 1643824..1643957 | 1088..953 | 300 | 91.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:59 has no hits.
FMO10118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:42 Download gff for
FMO10118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaCop-RA | 126..1277 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:45 Download gff for
FMO10118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaCop-RB | 125..1276 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:09 Download gff for
FMO10118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaCOP-RB | 125..1276 | 1..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:09 Download gff for
FMO10118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1644012..1644961 | 1..954 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:45 Download gff for
FMO10118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1644012..1644961 | 1..954 | 99 | | Minus |