Clone FMO10118 Report

Search the DGRC for FMO10118

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:101
Well:18
Vector:pMK33-CFH-BD
Associated Gene/TranscriptalphaCop-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10118.5prime Sequence

1151 bp (1049 high quality bases) assembled on 2010-11-05

> FMO10118.5prime
CAGTCGACATGCTGACCAACTTCGAGTCGAAGTCGGCGAGGGTGAAGGGC
CTCTCCTTCCACCCTAAGCGCCCCTGGATCCTGGTCAGCTTGCACAGCGG
CGTCATCCAGCTGTGGGACTACCGGATGCACACGCTCCTCGAGAAGTTCG
ACGAGCACGACGGACCGGTGCGAGGCGTGGCCTTCCACCAGCAGATGCCG
CTCTTCGTCTCTGGCGGCGACGACTACAAGATCAAGGTGTGGAACTACAA
GCAACGCCGATGCATTTTTACCCTCCTGGCCCATTTGGACTATGTGCGCA
CGGTGGCTTTCCACCACGAATACCCATGGATTCTGAGCGCCTCCGACGAT
CAGACCATACGCATCTGGAACTGGCAGTCGCGCAACTGCATCTGCGTGCT
GACGGGCCACAACCACTATGTGATGTGCGCCCAGTTCCATCCCACGGAGG
ATCAGATCGTTTCTGCTTCACTCGATCAGACGGTGCGCGTGTGGGACATT
TCGGGGCTGCGTAAGAAGAACGTGGCTCCCGGGCCCGGTGGGCTTGATGA
CCACCTAAAGGGTCATCCGGGTGCCACTGATCTGTTTGGCCAAGCAGATG
CCGTGGTCAAGCACGTGCTCGAGGGCCACGACCGTGGCGTCAACTGGGCC
AGTTTCCATCCCACCCTGCCGCTGATTGTCTCCGGTGCCGATGATCGCCT
TGTGAAGTTGTGGCGCATGAACGAGTACAAGGCTTGGGAGGTCGACACCT
GTCGCGGTCACTACAACAACGTGTCCAGCGTGTTGTTCCATCCCAGGCAA
GACCTGATTCTCTCCAACGGCGAAGATCGCAGTATTCGCGTCTGGGACAT
GACCAAGCGCCAGTGCCTCTTTACATTCCGGCGGGACAACGAGCGCTTCT
GGATACTTACAGCGCATCCGACCCTGAATCTGTTTGCAGCTGGCCACGAT
GGAGGTATGGTGGTCTTTAAACTGAGCGAGAGCGTCCTGCATATGCTGTC
CACGGGAATATTTCTCTTACTACGTCAAGAACGTTTCCCTTCGCAACTGG
ACTTTAACCACCACTAAGGAAACCTGTGGTTATGCAGCCTCCGACCAGCA
GTTCGCCGGGTTAAGCAATGTCGTTACCACAGACACTGAACGCCGTCTTA
T

FMO10118.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
alphaCOP-RA 4078 CG7961-RA 242..1378 8..1146 5240 98 Plus
alphaCOP-RB 3970 CG7961-RB 134..1270 8..1146 5240 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1644010..1644958 956..8 4745 100 Minus
3L 28110227 3L 1643824..1643957 1088..953 300 91.3 Minus
Blast to na_te.dros performed on 2014-11-26 16:51:59 has no hits.

FMO10118.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:42 Download gff for FMO10118.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaCop-RA 126..1277 1..1151 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:45 Download gff for FMO10118.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaCop-RB 125..1276 1..1151 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:09 Download gff for FMO10118.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaCOP-RB 125..1276 1..1151 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:09 Download gff for FMO10118.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1644012..1644961 1..954 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:45 Download gff for FMO10118.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1644012..1644961 1..954 99   Minus