Clone FMO10120 Report

Search the DGRC for FMO10120

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:101
Well:20
Vector:pMK33-CFH-BD
Associated Gene/Transcript5-HT2-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10120.5prime Sequence

1135 bp (1028 high quality bases) assembled on 2010-11-05

> FMO10120.5prime
CAGTCGACATGGAGATGCAAAGCTACTCTGGTCGTGGACCATCGACAGGC
ACATCAGAAACAGCAACAGCAACAGCAGCAGTTGCATCTGCATCTGCATC
AGACACAGCAGCAACATTCACACTGCGACACTTCAATTGTCGGCTGGAAG
AGGCGGATTGGCCTGGGCCTCGCCAGCCGTTTATTGACTGCGAAGGCAGC
CACACCAACAGCACATCCTACACCCCCAGCAGCCTGCCCACCAGCAAAAA
CCTCATCGAGGGACCCAACAACACATTCCAGTGTGCACGGCAAGCTATCG
ACGAAGCGGAGCACAACGCATTCTATAGTTGCGATGGGGAAAGCCCATTG
TCTGAAAACTGCACTTTGAGGCTGAAGGCGCGACTGTTGCGATGGCCGTA
CGAGGCGTATGAGCACATTCGACTGGCAATCAACGGGGCACTCAGTGATT
ATGCTAGTGATAAACTTAGTGATAGTTCGAGCTGCGATGAAGGAGGCATG
GTGTTGCAATGTAAGCTGGGCCAGGCCCATGAACTATTGCTTTGTCATTT
GCAACAACTCGAGAGGGAGCCACTGCGGGAGGTGGGAAGCGCGGAGGAGA
GCTTCTCCAACGACAGCCTTCTGCAGGCCTTTCAAATCGAACTGGGCGCA
GAGCGCGATGGACTCTGGTCCTTCCTTAATCTAAGCGAGCTAATGGAGCC
CGATCACGGATTCCTGGGCATCATGAATGTCACCAACACTAGCTTAGACA
TGTTTTTGCCGAACCTTACAGCCCTGAACACGACCTCCACGGCCTCCACT
GCAGACATGGCCACCGAGTTCGCGGTAACAAAGAGCTTTCTGGACTACAG
TCCCCACGGCTACGATTTCCTATTCCTGTTCGTGGTGTTCTTTATCTTCG
CGGGTGGCCTGAGTAATATCCTTGTGTGCCTAGCCGTTGCCTTGGACCGG
AAACTGCAGAATGTGACTAACTACTTCCTGTTTTCCCTGCTATAGCCGAT
CTCCTGGTCAGTTGTTGTGATGCCCATGGGCGCGATACCAGCTTTTTTGG
GGTATGCCCACTACTTACCTGATGCACATTATGTGACCTGTGACGTACTG
CCTGCTCATCAGTATATTTGGCAATGTGTCTTACT

FMO10120.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT2A-RH 3683 CG1056-RH 553..1673 9..1118 5265 98.6 Plus
5-HT2A-RF 3541 CG1056-RF 414..1534 9..1118 5265 98.6 Plus
5-HT2A-RD 3178 CG1056-RD 553..1673 9..1118 5265 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4622580..4623625 9..1051 5085 99.5 Plus
Blast to na_te.dros performed on 2014-11-26 16:52:02 has no hits.

FMO10120.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:43 Download gff for FMO10120.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT2-RC 541..1680 1..1132 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:48 Download gff for FMO10120.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT2-RF 407..1546 1..1132 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:12 Download gff for FMO10120.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT2A-RD 546..1685 1..1132 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:12 Download gff for FMO10120.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4622573..4623624 1..1050 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:48 Download gff for FMO10120.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 448295..449346 1..1050 99 -> Plus