FMO10122.5prime Sequence
1178 bp (1080 high quality bases) assembled on 2010-11-05
> FMO10122.5prime
CAGTCGACATGGGGAATAGTCTGATAACGAGTGGAAAACCGAGTCAGCGC
CGTGAAAAGAGGCTTTTCGAGAGGCTGAGCTGCAGCTACGCTCAGACCCC
CAACAGAATGGAGTTGAACTTGAATCCCCTGCTGGCCATCGCCCGTTCCA
TTGCGGCGCCACCGACACCGCCTCCAACCCCGGAAAAGTTGGACTCGGAT
AAGGATAAGGAGGGTTCCTCCAAAGCCGCCATCGAACTGCTGCCTAACGA
GATGTGGCTAGAGATCATGTCCTACCTTTCGTACAATGACCTGCTGCAAT
TGCGGATGGTGTCCTGGCGGTGCCGTGATCTGGTTCATCGTCGTCGATTC
ATGGAGAAAGGGAAGGTGATAGTGACGCAACACAACCTGGAGGCGATCCA
CAAGCATGCGAAGGGCGGAAATTGCTATTTGAGCTTCGAGCGGATTGAAT
TAAGAAATCTACGCCAGTGCCGCCAGTTGGAGAACTTTCTGCGTCTTGTG
GGCCACGAAGTGAAGCATCTGCAAGTGCGCCATGCTCCTGTTTTCCGGAA
TCTGGATGGCAAGTTACCAAACCTTAAGGTTCTGACCATTGCCACGACTA
TGTCGATGGATGACCAGCATCTGGCGGCGATGGATGACCTGGATATGAAG
CAGTTTTCCCACCTTGTGGGATTCGAATGCGATGGCGTGAGTTTGGACGC
GGTGCTTAAGATGCGAATGTTGTTGCAGCTGCGACGAACGGAGAACAAGT
GCAACTGCGGCACCTGCAATTCGAATTCCGGCGGAACAACGAAAATGCTC
TGCTGGATGTCCTACAGGATCATGCGGAAACCTTGGTGTGCGTCAATTTA
TTCTTCAGCTGCTCGCCGGGCATTGATACGCGTGAATGGTGCCGAGCGTT
CGAAATATGCACAATCTGCGAACTCTCAAGCTTTCGGGAAATTGTCATCT
GGTCCTGTTGGAAGCTGTCCTAAGAGCCGTTCCGGAGTCAGCACATCCGT
CACTGGATTTGACCGGAATGTTATCGCTAACCAACGAATTACTGCTCTAA
TGTAGCTGGCAAGGTGCCAAGCACTCTTGAAAGTGCTCGATCTTATGGTT
TGTGGTCAACTCACGCCATGCCATGATGCACTGGCCCAACCTGAAATGTC
GGTTGAGACTTGAACATGGCTTACGACA
FMO10122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12402-RC | 3476 | CG12402-RC | 506..1679 | 8..1174 | 5295 | 97.3 | Plus |
| CG12402-RB | 3476 | CG12402-RB | 506..1679 | 8..1174 | 5295 | 97.3 | Plus |
| CG12402-RA | 3476 | CG12402-RA | 506..1679 | 8..1174 | 5295 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14106413..14107435 | 1113..94 | 4690 | 98.5 | Minus |
| 3R | 32079331 | 3R | 14107729..14107816 | 95..8 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:37 has no hits.
FMO10122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:39 Download gff for
FMO10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 1..1108 | 9..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:32 Download gff for
FMO10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 503..1614 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:58 Download gff for
FMO10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 503..1614 | 1..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:58 Download gff for
FMO10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14107729..14107819 | 1..95 | 95 | | Minus |
| 3R | 14106401..14107433 | 96..1123 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:32 Download gff for
FMO10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9932123..9933155 | 96..1123 | 98 | <- | Minus |
| arm_3R | 9933451..9933541 | 1..95 | 95 | | Minus |
