FMO10123.5prime Sequence
1136 bp (1005 high quality bases) assembled on 2010-11-05
> FMO10123.5prime
CAGTCGACATGGACAGCACCGAATTTCGAAAACGTGGCATGGAAATGGTG
GAGTACATCTGCAACTATCTGGAAACGCTGAACGAGCGACGGGTCACGCC
CAGCGTGGAGCCGGGATATTTGAGACACCTGTTGCCACCTGAGGCACCGC
AGGAGCCGGAGGACTGGGACCAGATCATGAGGGACGTGGAGGACAAGATC
ATGCCCGGCGTGACGCATTGGCAGCATCCTCGCTTCCACGCCTATTTTCC
GGCGGGCAACTCGTTCCCCTCTATCCTGGGCGACATGTTGGGCGACGGGA
TCGGGTGCATCGGCTTCTCCTGGGCCGCCAGTCCCGCGTGCACCGAGCTG
GAGACCATAGTGCTCGACTGGCTTGGCAAGGCCATCGGTCTGCCGGACCA
CTTTCTGGCCCTCAAGGAGGGCAGCACCGGAGGGGGAGTCATCCAGACTT
CCGCATCGGAGTGCGTACTGGTCACGATGCTTGCTGCCAGGGCACAGGCG
CTCAAGAGGCTCAAGGCCCAGCACCCGTTTGTGGAGGAGGGTCACCTGCT
GTCCAAGCTTATGGCCTACTGCTCCAAGGAGGCGCACAGCTGCGTGGAGA
AAGCGGCGATGATCTGTTTCGTGAAGCTGCGCATTCTGGAGCCCGACGAC
GACGCCAGTCTGCGCGGCCAGACGATCTACGAGGCAATGGAGGAGGACGA
ACTGCAGGGTCTGGTGCCCTTCTTCGTCTCCACCACTCTGGGTACCACGG
GCTCGTGTGCGTTCGACAATCTGCCAGAGATCGGCAAGCAGTTGCAGCGA
TTCCCGGGCGTTTGGCTGCACGTGGATGCCGCCTACGCGGGCAACAGCTT
CATCTGCCCCGAGCTGAGCCGCTCCTGAAGGGCATCGAGTACGCCGACTC
GTTCACACCAATCTCAACAAATGGCTGCTGACGAACTTCGATTGCTCGAC
GCTGTGGGTGCGGGACCGCATCCGGCTGACTTCAGCCCTGTGGTGATCCG
CTGTACCTGTAGCACGGCTACTCGGATGCGGCCATCGATATTCGTCATGG
GGGAGTCCCTCAGTCGGCGGTTTCGTTCGCCTGGAGCTGGGTTCTGGCTG
CGATCCTATGGATCCAGCTGCACCATATATACGTCA
FMO10123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc2-RA | 2303 | CG30446-RA | 163..1301 | 9..1136 | 5205 | 97.9 | Plus |
| Tdc1-RA | 2281 | CG30445-RA | 1012..1168 | 811..965 | 220 | 78 | Plus |
| Hdc-RD | 3733 | CG3454-RD | 920..1080 | 237..397 | 205 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6687407..6687846 | 881..443 | 2150 | 99.8 | Minus |
| 2R | 25286936 | 2R | 6688003..6688310 | 446..139 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 6687149..6687355 | 1080..879 | 700 | 93.7 | Minus |
| 2R | 25286936 | 2R | 6688373..6688502 | 138..9 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 10241871..10242031 | 237..397 | 205 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:51:41 has no hits.
FMO10123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:39 Download gff for
FMO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 151..1259 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:35 Download gff for
FMO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 163..1271 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:00 Download gff for
FMO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 163..1271 | 9..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:00 Download gff for
FMO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6687139..6687353 | 881..1090 | 93 | <- | Minus |
| 2R | 6687408..6687842 | 447..880 | 99 | <- | Minus |
| 2R | 6688003..6688310 | 139..446 | 100 | <- | Minus |
| 2R | 6688373..6688502 | 9..138 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:35 Download gff for
FMO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2574644..2574858 | 881..1090 | 93 | <- | Minus |
| arm_2R | 2574913..2575347 | 447..880 | 99 | <- | Minus |
| arm_2R | 2575508..2575815 | 139..446 | 100 | <- | Minus |
| arm_2R | 2575878..2576007 | 9..138 | 100 | | Minus |
