FMO10127.5prime Sequence
1138 bp (1004 high quality bases) assembled on 2010-11-05
> FMO10127.5prime
CAGTCGACATGGATATGGAGTATATAACTAGCAGTAGTGGCAACATAACT
GCCACTACAGAAGCAGATTTCAGTTCATCTTTGGGCGAATCCAATGTCAC
GGAATACAATACAACGGAAATGGACGCGAATGAATCAGCTGGCGAGGATG
AGGAGATGCTAAGGATAGCCTTTTTTATAGGGCACTTCGTGCATCAATAC
TATATACCAGTGCTTTGCTGCACGGGCAGCATTGGCAATATCCTCTCCGT
GTTTGTCTTCTTTAGGACCAAGTTGAGAAAGTTGTCCTCCAGCTTTTACC
TGGCCGCTCTCGCAGTGAGCGACACCTGCTTCCTGGCCGGACTCTTCGCA
CAGTGGCTGAACTTCCTCAATGTGGATATCTATAATCAAAACTACTTTTG
CCAGTTCTTCACGTTCTTCAGCTACCTGGCCAGCTTCTGCTCCGTCTGGT
TTGTGGTGGCCTTCACCGTGGAGCGCTTCATTGCCGTCATCTATCCACTG
AAGCGCCAGACCATGTGCACCGTGCGCCGGGCCAAGATCGTCCTGTTTTG
TTTGACACTCGTGGGATGTCTGCACTGTCTGCCCTATATAGTCATTGCCA
AGCCGGTGTTTATGCCCAAATTGAACACGACCATTTGCGATCTCAACTCG
GAATACAAAGAACAACTGGCCCTCTTCAACTACTGGGACACCATAGTTGT
CTATGCGGTGCCCTTCACCACCATCGCCGTTCTGAACACCTGTACAGGTT
GTACGGTGTGGAAGTTCGCCACCGTTCGCCGAACGCTGACCATGCACAAG
ATGAAGCCCCAAACGAACAGCATGCCATCGTACTCGTCGAACTCATCGGG
CGGAGCCTCATCTGCAGTGGCCTCGTACCGCCTATCGGCATCGCTGAGCG
CCAGAAGTCGACGGAACGCATCCTAGTGGACAGCATATGTGGCCAACAGG
CAAGACGGATGATCAGGAGCAGCAAAGCAGTCCCAGCAGCATCAAAAAAC
AATTGCCAACACCATTGCGAGAATACGCCAAACCAGCCCGTTCGCAAGGT
GCAAACCTCATCGCAAGCTCAAGTAACCAAATGCCGTCCTAATTGTCCGA
CGGTTGTTTGCCTCAATTTGCAGTTGCTGCTGGGCATC
FMO10127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNMaR-RA | 2704 | CG33696-RA | 727..1867 | 8..1138 | 5135 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9644835..9645487 | 8..660 | 3265 | 100 | Plus |
| 3L | 28110227 | 3L | 9650980..9651209 | 803..1028 | 795 | 95.7 | Plus |
| 3L | 28110227 | 3L | 9650344..9650487 | 660..803 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:51:18 has no hits.
FMO10127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:35 Download gff for
FMO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33696-RA | 720..1861 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:22 Download gff for
FMO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33696-RA | 720..1861 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:49 Download gff for
FMO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CNMaR-RA | 720..1861 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:49 Download gff for
FMO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9644828..9645486 | 1..659 | 99 | -> | Plus |
| 3L | 9650344..9650486 | 660..802 | 100 | -> | Plus |
| 3L | 9650980..9651218 | 803..1036 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:22 Download gff for
FMO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9637928..9638586 | 1..659 | 99 | -> | Plus |
| arm_3L | 9643444..9643586 | 660..802 | 100 | -> | Plus |
| arm_3L | 9644080..9644318 | 803..1036 | 95 | -> | Plus |
