FMO10130.5prime Sequence
1134 bp (1035 high quality bases) assembled on 2010-11-05
> FMO10130.5prime
CAGTCGACATGCAGGTCCCGCTCAGCGATGTTCAGGTCCTGCAGGATCCC
ACCGACGCGGAAACCCTTGTCGGCGGCGACAAGGAGGAGACCTTTGCCCA
CATGAAGGAGTGGAAGCGCCAGTACATGCGGGGCATCTCGCACACGCCAT
CGCAGGCGGGAGTCTACTACGAGGCCTTGAAGGGTTCCAGCCACTCGCTG
GCCAAAGGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGTTCGCCG
ACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGCACCTGC
AAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATGGTGGAT
TGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTATCCTGTC
TTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACACACGGAG
ACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGTTGGGCG
CCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTTCTCCAT
TGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGCCCGAGT
GTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGCGTGATG
TCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAGGGCCAA
ACAGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAATTTGCCAAC
GTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGAAAATCA
CACATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAAGAGCAC
CAAGGAGGGTGAGGTGATGACACAGTACTTCACAGAACTGGAGATCGGTA
CTGATGACTCCGGCTCTGATTTGTTCTTCATCTGGCCCATGTCATCGAGC
ACAGATCGACGAGAACTCCACGCTCTATATCTAATGCCACTGAATATGCT
GCAGATAAGTTCGAAATCGTGGTGATCCTAAAGGGCACCGTGGGAGTCAA
CTGAACGAACACTCAGCCCGAATCAGCTTATATTAACTGAATCTTTGGGA
CATCGTCGAATCAATGGGTTGACACAGAATCGCA
FMO10130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RC | 1485 | CG4370-RC | 50..1156 | 9..1106 | 5050 | 97.8 | Plus |
| Irk2-RB | 1600 | CG4370-RB | 50..1156 | 9..1106 | 5050 | 97.8 | Plus |
| Irk2-RD | 2248 | CG4370-RD | 543..1450 | 208..1106 | 4055 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23514596..23515161 | 1043..482 | 2495 | 98.1 | Minus |
| 3R | 32079331 | 3R | 23515213..23515488 | 483..208 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 23518070..23518269 | 208..9 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:24 has no hits.
FMO10130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:36 Download gff for
FMO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RB | 37..1105 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:25 Download gff for
FMO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RB | 42..1110 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:52 Download gff for
FMO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RB | 42..1110 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:52 Download gff for
FMO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23518070..23518275 | 1..208 | 98 | | Minus |
| 3R | 23514574..23515159 | 484..1065 | 97 | <- | Minus |
| 3R | 23515213..23515487 | 209..483 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:25 Download gff for
FMO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19343792..19343997 | 1..208 | 98 | | Minus |
| arm_3R | 19340296..19340881 | 484..1065 | 97 | <- | Minus |
| arm_3R | 19340935..19341209 | 209..483 | 100 | <- | Minus |
