FMO10135.5prime Sequence
1133 bp (1043 high quality bases) assembled on 2010-11-05
> FMO10135.5prime
CAGTCGACATGAGTCAACAGGCGAAAAACGAAAACATCTACGCAACTCTG
CCGCGCACCCAACGCGGCCAACCCATCGTTTTGGGTGCCGATCCCAAGGG
CAAGAACTTCCTGTACACCAATGGAAACTCTGTGATCATCCGGAACATCG
AGAATCCAGCCATTGCCGATGTCTACACGGAGCACTCGTGTGCAGTGAAC
GTGGCCAAGTACTCGCCCAGCGGATTTTATATTGCATCTGGTGACGCCTC
CGGCAAGATTCGCATTTGGGACACGGTCAACAAGGAGCACCTGCTTAAAA
ATGAGTTCCAGCCCATTGCAGGACCCATCAAGGATATTAGCTGGTCGCCA
GACAATCAGCGCATCGTTGCCGTGGGTGAAGGACGCGAACGTTTCGGTCA
TGTCTTTATGTCTGAAACCGGCACGTCTGTGGGCGAGATCAGTGGCCAGT
CCAAGTCTATTAACTCGGCGGACTTCCGGCCAGCCAGGCCATTCCGCATT
GTTACGGGCAGCGAAGACAATACTATCGCCGTGTTCGAGGGACCCCCGTT
CAAGTTCAAGATGACCAAGCAGGATCACTCTCGCTTCGTCCAGGCTGTGC
GCTACTCGCCCGATGGCAAATTCTTCGCCTCCGCCGGCTTTGATGGCAAA
GTCTTTCTGTACGATGGCACCAGCTCTGAACTGGTGGGCGAATTTGGATC
TCCTGCCCACAAGGGCGGCGTTTACGCATTGGCCTGGAAACCAGACAGCA
CCCAACTGCTAACCTGCTCCGGCGACAAGACGTGCCGCCTTTGGACAGTG
GAGTCGCGCGAGCTGGTTAGCGAGTTTGTGATGGGCACCACTGTGGACGA
CCAGCAGTGTCCTGCTTGTGGCAAGGAGACAACCTAATCACCGTCTCGCT
TTCGGGCGTGATCACCTACCTCAATGTGCGGATCCCTCGAAACCGCTGCG
TGTGTGAAGGGCCACAATAGCCCATCACCGTGCTGGGACTGACGATGACC
GCAGCACCATATACACGGGTAGCCACGATGGCGTGGTGACCACTGACTCG
GCACGGACCACGATCGCATCCGGGTCACTTGAACCGGACGAATCACGCAT
GGCCGCCTGGGGGTGACTTGCCTATCTGGGATC
FMO10135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flr-RB | 2210 | CG10724-RB | 47..1173 | 9..1119 | 5090 | 97.8 | Plus |
| flr-RA | 2275 | CG10724-RA | 128..1238 | 25..1119 | 4995 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13414660..13415205 | 502..1042 | 2465 | 98.9 | Plus |
| 3L | 28110227 | 3L | 13414336..13414601 | 243..508 | 1330 | 100 | Plus |
| 3L | 28110227 | 3L | 13413316..13413438 | 30..152 | 615 | 100 | Plus |
| 3L | 28110227 | 3L | 13414056..13414148 | 151..243 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:52:10 has no hits.
FMO10135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:44 Download gff for
FMO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10724-RB | 41..1104 | 2..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:52 Download gff for
FMO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flr-RB | 41..1104 | 2..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:16 Download gff for
FMO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flr-RB | 41..1104 | 2..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:16 Download gff for
FMO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13414337..13414600 | 244..507 | 100 | -> | Plus |
| 3L | 13413317..13413438 | 31..152 | 100 | -> | Plus |
| 3L | 13414058..13414148 | 153..243 | 100 | -> | Plus |
| 3L | 13414666..13415224 | 508..1056 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:52 Download gff for
FMO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13406417..13406538 | 31..152 | 100 | -> | Plus |
| arm_3L | 13407158..13407248 | 153..243 | 100 | -> | Plus |
| arm_3L | 13407437..13407700 | 244..507 | 100 | -> | Plus |
| arm_3L | 13407766..13408324 | 508..1056 | 98 | | Plus |
