FMO10136.5prime Sequence
1160 bp (1036 high quality bases) assembled on 2010-11-05
> FMO10136.5prime
CAGTCGACATGGCAACTGTGGCGCCCGCTGTAAAAGCCGCGAGCAAGGTG
CTCCAGAATCTGGGATTCCGGCTGCCCAAACAGATTAAGCCAAGCAAGTA
CCGCCTTCATTTGCGCCCCGATCTCGAACGAAAGAACTATTCCGGCAATA
TAAGCATCAGCCTGCAAGTACTGGAGCCCATAGCCTTCATCCCAGTCCAT
GTGAAGCAACTGAATGTGAGCACCGTTGAGGTGAAGCGCCTGGATGAATC
TGGAGCGCCGCTTAAGGACATCACCCCCACGCTGACCTTTGCCCATCCGG
AGTTTGAGTACTGGGTGACCGAGTTCGAACAGCCGCTGGAGGCGGGAAAC
TACTCACTGCTGCTCAACTTTACGGGATCGCTTGTAGATCGGATTACGGG
GATGTACCAGAGCTCCTACTTGGATAAGCTGAAAAACCGCTCCAGATCAA
TCATTTCCACAAAGTTTGAGCCCACTTATGCCCGCCAAGCATTCCCCTGC
TTCGATGAGCCCGCCCTTAAGGCTCAGTTCACCATAACGGTGGCCCGTCC
AAGTGGTGATGAGTACCATGTGCTGTCCAACATGCCAGTGGCCAGCGAGT
ATGTCGATGGCGATATCACCGAGGTGACTTTCGCGGAGACCGTACCCATG
AGCACCTATCTGGCCGCCTTTGTGGTGTCTGATTTTCAATACAAGGAAAC
CACTGTGGAGGGAACCAGCATCGCTCTGAAAGTCTATGCGCCACCAGCGC
AGGTGGAGAAAACCCAGTACGCCCTGGACACTGCGGCCGGAGTGATGGCC
TACTACATCAACTATTTCAATGTTTCGTATGCCCTACCCAAATTGGATCT
GGTTGCCATACCCGATTTCGTGTCCGGTGCTATGGAAAACTGGGGATTGG
TCACGTTCCGGGAGACTCTCTTCTGTACGACGAATCTACCAGTTCCAGCG
TGAATAAGCAGCGTGTGGCCATCGTCGTGCCCATGAGTTGCTCCCCAGTG
GTTCCGAAACCTGGTAACATGAACTGGTGAACGATTTGTGGCTAACAGAG
GGTTTCGCATCATTCTTTGAATACAGGGAGTAAGCCATTGCATCGATGGA
AATGACATCAGCTGTTTATGAAGACTGCACCGGGGGCTTGACACATTGGT
GCACCCTTAA
FMO10136.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-RB | 3002 | CG32473-RB | 134..1226 | 9..1094 | 5155 | 98.5 | Plus |
| CG32473-RC | 3635 | CG32473-RC | 767..1859 | 9..1094 | 5155 | 98.5 | Plus |
| CG32473-RA | 3273 | CG32473-RA | 840..1497 | 444..1094 | 2980 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13310143..13310780 | 443..1075 | 2835 | 98.1 | Plus |
| 3R | 32079331 | 3R | 13309519..13309955 | 9..445 | 2185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:52:13 has no hits.
FMO10136.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:45 Download gff for
FMO10136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RB | 130..1214 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:53 Download gff for
FMO10136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 763..1847 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:19 Download gff for
FMO10136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 763..1847 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:19 Download gff for
FMO10136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13309515..13309955 | 1..445 | 99 | -> | Plus |
| 3R | 13310146..13310798 | 446..1091 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:53 Download gff for
FMO10136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9135237..9135677 | 1..445 | 99 | -> | Plus |
| arm_3R | 9135868..9136520 | 446..1091 | 97 | <- | Plus |
