FMO10137.5prime Sequence
1132 bp (997 high quality bases) assembled on 2010-11-05
> FMO10137.5prime
CAGTCGACATGGATCGCAGTCTGGACTCTATTGGCAGCTGTTCACTGGAT
GTAGACGCCGACTCCTCCGATATATCAGATACCAGTGGGAGCCTGAACTT
TCCAACGCCGGTCTCAGTAAGGGACATAACACGCGAATTTACTGCCAACC
TTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGCCTCAGCACAAAACC
CCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAGCACATGGTGCTGTC
ACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTCCAATGATTTTGACG
AGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAAAGAAGCCCAGCTAT
TTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAACCTTACCACCTACGA
CTCCAAGATTCGGCAGGACATAAACAAGTCACCGACACCAACTCTGCACA
GCATGCCTTCTCCGGCCACCAAGTGCAAACCCATCGAGCCTAACAACAAC
AGCAACGACAGTAGCGGGAATTTTAGTTCGGGTTCTGGTCACAGCAATGG
AAATGGCAGTTTTATCAAGCAACGGGTGGAGCGACTTTACGGGCCGGGTG
CATTAGCCCAGGGTTTCTACAGCCCCAAAAAGCACGGCCAGTCACCATCG
AATGCTGCAGGGCGATCGGAAAGGGGGCAGGTGGAGATCGACTCTCTACA
AGGCTCCGAACTGGCTCGGAAATTCAAGCAGCTCTCCCCCAGTAAAGACT
ATGGGGAGTTTCGAAAAAAAATGCAGAAGAAGTGTTCTCAGAGTACAACG
GCGAGGATAGACGAGCCGTTGCATTCTCCAGGGCTTAACGGAGATCTTGA
CCTGCCCGTGTTTAGGCACCTTAGTCAAGAGTTCCGCGCCCAGTTGCCTA
CTGTGTCACCAAAAAGGGGTGCTTCCCGATCTGCATGGCTCCTGATGTAC
TGCTTGTAGATAACGAGTCAAGTCCAGACCCATGTTCCCACAGATGAAGT
GACCACGAATTCACCAAAATGGACAACCTAGCCTCCGAGAGAATACATCA
GCACTCCAAATTTTCGGTGGAGGCGTGTTGTTAAGAATGAATCCTTCCGG
AAAAAACTTAAAAGGACAAGCGTCCTGGTGCT
FMO10137.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RB | 2388 | CG8390-RB | 116..1197 | 8..1089 | 5080 | 98.2 | Plus |
| vlc-RI | 2425 | CG8390-RI | 578..1234 | 433..1089 | 2955 | 97.1 | Plus |
| vlc-RH | 2369 | CG8390-RH | 522..1178 | 433..1089 | 2955 | 97.1 | Plus |
| vlc-RI | 2425 | CG8390-RI | 87..511 | 8..432 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5703471..5704093 | 433..1055 | 2820 | 98.2 | Plus |
| 2R | 25286936 | 2R | 5703048..5703404 | 76..432 | 1785 | 100 | Plus |
| 2R | 25286936 | 2R | 5702877..5702947 | 8..78 | 355 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5601..5673 | 443..515 | 122 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2420 | 418..520 | 111 | 65.7 | Plus |
FMO10137.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:49 Download gff for
FMO10137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RB | 112..1183 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:06 Download gff for
FMO10137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RB | 109..1180 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:31 Download gff for
FMO10137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RB | 109..1180 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:31 Download gff for
FMO10137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5703051..5703404 | 79..432 | 100 | -> | Plus |
| 2R | 5702870..5702947 | 1..78 | 96 | -> | Plus |
| 2R | 5703471..5704110 | 433..1071 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:06 Download gff for
FMO10137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1590375..1590452 | 1..78 | 96 | -> | Plus |
| arm_2R | 1590556..1590909 | 79..432 | 100 | -> | Plus |
| arm_2R | 1590976..1591615 | 433..1071 | 97 | | Plus |
