FMO10140.5prime Sequence
1078 bp (921 high quality bases) assembled on 2010-11-05
> FMO10140.5prime
CAGTCGACATGTGCACTGAGGTGAATTCCGCGATGGGTCTTCAAGCAACA
GCCGCCACCAAGCGGAAGCATGAGCTGACCTTCGACAGCAAGGATGCCAA
CACCACCTACACGGGCAACTGTGCCCCGCCCCCCGTCAAGGCCAACAAGT
GGGCCATCAGCAACAACAACTACCTGGAGTCGCTCGAGGAGCAGCAGCAG
CAACAGCAATCGCCATCGGAGCCAGCTGTTGAGTCCAACAACAACCACAT
TGTTTTAGAAGCATCAATGGATGCGTTGAAGCCAACGGAGCCAAGTATTA
GCAATGGTCATGAAGTTACTACCGCCGTCGCAGCAATGAAAAGTCAAGCG
GAGGTGCCACTCCCGCCAACAGCGAGTGCGGCGATACCGGAGGACAGTAT
CGCCAGGTTAGAGGTGGTCACCTCAGCCGTTCCTTGTGAGCCCTGGACGA
GCAATGGGCCCACTACTCCTTCCGCGGTGGCAGGACCCGCAGCATCCGCG
GAACCTGTGGATTGCATCTCCAAGCTGCAGGCCGTCGCGGTGCCCAGTGA
TCCTTGGGGTAGCATTGCCACCCGCTCCACTCTGGCAACGACTTTGCTCA
GTGCCGATGAGCTGGACGACGATGATGATGATTTTGAGGACGACTACGAG
GAGGAGGAGAGCATCATACCCACCTACTGTCCCATGCGCTATCATCCCTT
TGTACCGCATCCGCACCCTCATTCGCACCAGCTGCCGTCCCATCCCCACC
AGCAGCAGCCGCAGCAGCTCTCCCAACAACAACCACATCCCCAGCAGCAG
CAACTCGCCCAGCAGCAGCAACAACATCCGCAGCAGCAGCGAAGCTATGC
CCCGGATATGGGAGCAGCAACCCAACTACTATTCGGAGCCTTTCCCGCAG
CAGATTTGCTCGCGGACAGGAGACCGCAGCAATGACCGCATCACGCAACA
CGCAGCAGCGCGTTGATTCGCTCCACCCCAATTGGGCGACAGCGGGTAGC
ATTCGCCCATTCCTCATCGGGAGCCCAACGTTTCTCAAGCCGAACAACGT
TGAGCTTATGCCCCGCCACGGGGCCAAC
FMO10140.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tara-RB | 4066 | CG6889-RB | 503..1573 | 9..1068 | 4820 | 97.5 | Plus |
| tara-RA | 4341 | CG6889-RA | 790..1848 | 21..1068 | 4760 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16256776..16257836 | 19..1068 | 4490 | 97.3 | Plus |
Blast to na_te.dros performed 2014-11-26 16:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2431 | 142..249 | 160 | 64.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1086..1123 | 187..224 | 109 | 76.3 | Plus |
FMO10140.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:51 Download gff for
FMO10140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 491..1579 | 1..1078 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:12 Download gff for
FMO10140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 491..1579 | 1..1078 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:37 Download gff for
FMO10140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 494..1582 | 1..1078 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:37 Download gff for
FMO10140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16256776..16257845 | 19..1078 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:12 Download gff for
FMO10140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12082498..12083567 | 19..1078 | 97 | | Plus |
