FMO10141.5prime Sequence
1120 bp (1037 high quality bases) assembled on 2010-11-05
> FMO10141.5prime
CAGTCGACATGTTAAAGTTTATCAGAGGAAAAGGGCAGCAGCCCAGTGCT
GACAGACAACGCTACATCACGGCACAGCATGGCTTTCCTCATAAGCCTTC
GGCTCTTGCGTATGATCCAGTTTTGAAACTTATGGCAATAGGGACGCAAA
CAGGGGCTTTAAAAGTTTTCGGTCAACCCGGAGTTGAATTGTACGGTCAG
CATACTTTGTTAAACAATTCAGCATCGGAGCTTAATGTACAATTACTTGA
ATGGGTGTATGGAACTGGTCGCATACTTTCGTTGACGGCAGCGAATCAAT
TAATTCTATGGGAGCCAGTTGGAGCAACGTTGCTGCCAATCAAAACACTA
CCGTTTGACGGCAAACTTAAAAAAGTTTCATCGCTGTGCTGTTCTCTCAG
TAAGGATCTGCTATGGATTGGAACAGAAGGTGGAAACATCTATCAACTGG
ATTTACATACATTTACCATTAAGGAGCCTGTAATTTACCATGACGTTGTG
CTAGAGCAGGTGCCACCAGCCTACAAGCTAAATCCTGGTGCAATTGAGTC
AATCCGCCAACTTCCAAACTCCCCTAGCAAACTTCTAGTTGCATACAATC
GCGGCCTTTGTGTTTTGTGGGATTTTGAAAGCGCATCTGTCCAGCGAGCA
TACATAGCCCCTGGACATGGACAGAGCGTTGGTCTTACAGTGAACTTCGA
AGGATCTGAATTTACCTGGTACCACGCTGATGGTTCATACGCCACTTGGA
GCATAGATAACCCAGAACCGCCGTCGAATGTTAATTATGTGCCTTATGGA
CCTGATCCATGCAAAAGCATAAATCGACTGTACAAAGGCAAGCGAAGATC
CAACGATGTAATTGTTTTTTCCGGCGGCATGCCACGGTCAGCATATGGTG
ATCACAATTGTGTGTCCGTTCACGCCAGCGATGGACACAAAGTGTGTCTT
GACTTTACGTCTAAAGGTGATTGACTTTTTTGTGACCTTTGAAAATAATA
GAAATGTCCGCTGAAGTCTTGTTGTACTACTTGAAGAAGGACTCTCTGCC
CCTTACGATTCTTACTGACCTAATTATTTTGGTGCTATCAAAGCGCGAAT
CTTCATCTTGTTCATGCACT
FMO10141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gl-RB | 5155 | CG2671-RB | 317..1421 | 8..1118 | 5160 | 98.3 | Plus |
| l(2)gl-RF | 5082 | CG2671-RF | 239..1348 | 8..1118 | 5100 | 97.9 | Plus |
| l(2)gl-RE | 5225 | CG2671-RE | 382..1491 | 8..1118 | 5100 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14933..15711 | 847..69 | 3895 | 100 | Minus |
| 2L | 23513712 | 2L | 14678..14876 | 1045..846 | 810 | 97 | Minus |
| 2L | 23513712 | 2L | 19885..19945 | 68..8 | 305 | 100 | Minus |
| 2L | 23513712 | 2L | 17083..17136 | 62..9 | 255 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:52:56 has no hits.
FMO10141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:51 Download gff for
FMO10141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gl-RB | 309..1417 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:13 Download gff for
FMO10141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gl-RB | 313..1421 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:39 Download gff for
FMO10141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gl-RB | 313..1421 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:39 Download gff for
FMO10141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14933..15711 | 69..847 | 100 | <- | Minus |
| 2L | 17075..17136 | 9..68 | 91 | | Minus |
| 2L | 14610..14874 | 848..1118 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:13 Download gff for
FMO10141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14610..14874 | 848..1118 | 93 | <- | Minus |
| arm_2L | 14933..15711 | 69..847 | 100 | <- | Minus |
| arm_2L | 17075..17136 | 9..68 | 91 | | Minus |
