FMO10142.5prime Sequence
1140 bp (1010 high quality bases) assembled on 2010-11-05
> FMO10142.5prime
CAGTCGACATGTTTACCCGATGTGCCAATTCGCTTGGCCTCTACCATAAT
AATATTAACAATAACAACAGCGCTTGCTGTGCCGCTTCCCCGAAAAGAAG
CTGCCTTCCGAGTGTGGAAAAGCCTGAAGATGCGTGCCTACAGGTGGCGA
CGAATGTGACCGAGCAAAAGCACCATGTCACCAGGGAGACGCGCGGCAAG
AATTTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGG
CCTCAGTGGAGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCGTACC
TGGTATCCCGGGGCATTCCGGCCTACGGGTTGGACGGCGACAACATTCGC
ACCGGACTGAACAAGAACCTGGGCTTCACGCCCGCCGATCGCGAGGAAAA
CATTCGCCGCGTGGGCGAGGTGGCCAAGTTGTTTGCCGACAGCGGAGTGG
TGGCCATCTGCAGCTTCGTTTCGCCCTTCGCCGACGATCGTGAGATGGCG
CGCAAGATCCACAAGGATGCGGGTCTGAAGTTCTATGAGATATTCGTGGA
CACACCGCTGGATGTGTGCGAAACCCGGGACGTGAAGGGTCTATACAAGA
AGGCGCGCGAGGGCGTAATCAAAGGATTCACGGGCATTACGCAGGAGTAC
GAGCGACCCCAGATGCCGGAGCTGGTGGTCAACACGCACGGCTACACGGT
GCGCGAGTCCACTCAGAAGCTGGTGACGCTGCTCGAACAGGAGGGCATTA
TTCCGCGCTCGCTGCGCGACGTAGACCTGCTGCCGGAGCTTTATCCCAGC
GAATCCATTGCCACGGAGGCACTGCGTCACGAGGCCGAGTCGCTGCAAGC
CATCGAAATCAGCACCGTGGAGCTGCAGTGGGTGCAAGTACTGGCCGAGG
GATGGGCATATCCACTGCGCGGCTTCATGCGCGAGGATGAGTACCTGCAG
ACGCTGCACTTCAAACACCCTTCAGAGCGGCATGGACGTTCCTTTCGCGA
GAACCACTCGGTGCCCATTGTTTTGAACGCCACGCCAGCCGAACAGAATC
GTCTGAACGCTGCTCCTCGCTGACTCTTCAAATAACCAGCAAGGCGGTTA
GCATTCTCTGCGCCGTTCCCGGTCTAACTTTCAGCGTAGG
FMO10142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RD | 2457 | CG8363-RD | 170..1298 | 9..1138 | 5175 | 97.8 | Plus |
| Papss-RG | 2432 | CG8363-RG | 269..1273 | 133..1138 | 4555 | 97.5 | Plus |
| Papss-RB | 2394 | CG8363-RB | 231..1235 | 133..1138 | 4555 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19858814..19859643 | 249..1077 | 3855 | 98.4 | Plus |
| 3L | 28110227 | 3L | 19847478..19847603 | 9..134 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 19858377..19858493 | 134..250 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:52:59 has no hits.
FMO10142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:52 Download gff for
FMO10142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 168..1298 | 9..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:15 Download gff for
FMO10142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 170..1300 | 9..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:40 Download gff for
FMO10142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 170..1300 | 9..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:40 Download gff for
FMO10142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19847478..19847603 | 9..134 | 100 | -> | Plus |
| 3L | 19858378..19858492 | 135..249 | 100 | -> | Plus |
| 3L | 19858815..19859646 | 250..1081 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:15 Download gff for
FMO10142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19840578..19840703 | 9..134 | 100 | -> | Plus |
| arm_3L | 19851478..19851592 | 135..249 | 100 | -> | Plus |
| arm_3L | 19851915..19852746 | 250..1081 | 98 | -> | Plus |
