FMO10143.5prime Sequence
1150 bp (1025 high quality bases) assembled on 2010-11-05
> FMO10143.5prime
CAGTCGACATGCCGAATCCGCCAATTGGATTTTATCCCCATATCAAAAGA
AGGTGCCTACAGGTGGCGACGAATGTGACCGAGCAAAAGCACCATGTCAC
CAGGGAGACGCGCGGCAAGAATTTGGGACTCTGTCGAGGATTCCGAGGAT
GCACGGTGTGGCTGACTGGCCTCAGTGGAGCTGGAAAGACCTCGATTGCC
TTCGAACTGGAGGCGTACCTGGTATCCCGGGGCATTCCGGCCTACGGGTT
GGACGGCGACAACATTCGCACCGGACTGAACAAGAACCTGGGCTTCACGC
CCGCCGATCGCGAGGAAAACATTCGCCGCGTGGGCGAGGTGGCCAAGTTG
TTTGCCGACAGCGGAGTGGTGGCCATCTGCAGCTTCGTTTCGCCCTTCGC
CGACGATCGTGAGATGGCGCGCAAGATCCACAAGGATGCGGGTCTGAAGT
TCTATGAGATATTCGTGGACACACCGCTGGATGTGTGCGAAACCCGGGAC
GTGAAGGGTCTATACAAGAAGGCGCGCGAGGGCGTAATCAAAGGATTCAC
GGGCATTACGCAGGAGTACGAGCGACCCCAGATGCCGGAGCTGGTGGTCA
ACACGCACGGCTACACGGTGCGCGAGTCCACTCAGAAGCTGGTGACGCTG
CTCGAACAGGAGGGCATTATTCCACGCTCGCTGCGCGACGTAGACCTGCT
GCCGGAGCTTTATCCCAGCGAATCCATTGCCACGGAGGCACTGCGTCACG
AGGCCGAGTCGCTGCAAGCCATCGAAATCAGCACCGTGGAGCTGCAGTGG
GTGCAAGTACTGGCCGAGGGATGGGCATATCCACTGCGCGGCTTCATGCG
CGAGGATGAGTACCTGCAGACGCTGCACTTCAACACACTTCAGAGCGGCA
TGGACGGTTCCTATCGCGAGAACCACTCGGTGCCCATTGTTTTGAGCGCC
ACGCAGCGGACAAGGATCGTCTGGACGGCTGCTCCTCGCTGACTTCTCAA
ATACCAAGGCAAGGCGGTAGCCATTCTTGCGGCGTCCCGAGTTCCTACTT
TCAGCGTAAGGAGGAAGGGCTGACCGCCAGTTCGGCACCAAGCCATTCCC
ATTCACCGTAAGTAGCAGGTCTTCACAATCGGAATATTTTGGTCGGGTGG
FMO10143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RH | 2686 | CG8363-RH | 480..1593 | 9..1122 | 5255 | 98.6 | Plus |
| Papss-RF | 2729 | CG8363-RF | 523..1636 | 9..1122 | 5255 | 98.6 | Plus |
| Papss-RE | 2396 | CG8363-RE | 190..1303 | 9..1122 | 5255 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19858814..19859735 | 168..1090 | 4315 | 99 | Plus |
| 3L | 28110227 | 3L | 19858377..19858493 | 53..169 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 19848354..19848398 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:53:03 has no hits.
FMO10143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:52 Download gff for
FMO10143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RF | 519..1618 | 9..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:16 Download gff for
FMO10143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RE | 190..1289 | 9..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:43 Download gff for
FMO10143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RE | 190..1289 | 9..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:43 Download gff for
FMO10143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19848354..19848398 | 9..53 | 100 | -> | Plus |
| 3L | 19858378..19858492 | 54..168 | 100 | -> | Plus |
| 3L | 19858815..19859754 | 169..1110 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:16 Download gff for
FMO10143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19841454..19841498 | 9..53 | 100 | -> | Plus |
| arm_3L | 19851478..19851592 | 54..168 | 100 | -> | Plus |
| arm_3L | 19851915..19852854 | 169..1110 | 98 | | Plus |
