FMO10148.5prime Sequence
1137 bp (1037 high quality bases) assembled on 2010-11-05
> FMO10148.5prime
CAGTCGACATGGCGGTCTTGTTTTTATCGTCACATGGCGCCTCCAGGCAT
TGGCGGTTGCGGAGGCCGAGTCGCTGGGCGTACAACAGGATGGCGATATT
CAGCAGCACAACGACGGTGGATACCACGACCAGAAAGCGCTCGACTAATA
AGAACCACGTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGAAGTCATCG
CACTACGAGCACCCTTCCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGA
AGAGATGGGAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCC
TCTCGGCCATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTCAAAT
GAGACGACCCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTACAGCA
CACGCAACGGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGATAGCC
CAGCTGTGGAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTG
CAGATTCTGGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGG
CAATTCAAACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCA
CCTGTAACAACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCCATCA
ACCAGCAGGTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAA
TATTACAACCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCC
CGGCCATGAGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAGACTT
TCAGACGAAATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGACGCT
GCTGCGCATGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGCGATG
AGACTTTGTGGACAAGGCTAGATTTGGGTTTGCGGACATTAGACCAGTGC
CCTCGAGCAAATTGTACGGCGGGGAGTCCTTGTATACGTCTGGCCCAGAA
CTAGTATCCAGGAGCCGCATTTGCACCATAAAACAGAATGTTTAGGACCC
GATACAATTTTCTTGACTGATATGGCTCCATCACCGGAGCTCCCTGGCTG
AACCTATTGTCCCAATTGCGCCAGCTTAGGAATAGCT
FMO10148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 122..1126 | 128..1126 | 4560 | 97.7 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 122..1126 | 128..1126 | 4560 | 97.7 | Plus |
| CG1103-RB | 1223 | CG1103-RB | 676..800 | 133..9 | 625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336474..4337345 | 999..131 | 4210 | 99.7 | Minus |
| 3R | 32079331 | 3R | 4339367..4339491 | 133..9 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:52:36 has no hits.
FMO10148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:49 Download gff for
FMO10148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RB | 68..1148 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:04 Download gff for
FMO10148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RB | 68..1148 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:29 Download gff for
FMO10148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 122..1093 | 128..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:29 Download gff for
FMO10148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336469..4337342 | 134..1005 | 99 | <- | Minus |
| 3R | 4339367..4339498 | 1..133 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:04 Download gff for
FMO10148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 162191..163064 | 134..1005 | 99 | <- | Minus |
| arm_3R | 165089..165220 | 1..133 | 97 | | Minus |
