FMO10152.5prime Sequence
1112 bp (1029 high quality bases) assembled on 2010-11-05
> FMO10152.5prime
CAGTCGACATGCTGAGCATTATAAATGCAATGATTGCCTTCCTCCTGGCA
ACGACACTTTGCAGTGGATACGGATACGCGCAGGCCCAGTTGCTCGACGA
GGACGACGACCTGGCCTTCGGAAGGCCCTGGCCCACCTACAGCCTACAGA
ACATGCCCAAGACGCAGTTCACCTGCCACGACAAGATCCTGGGTGGCTAC
TATGCCGATCCGGAGACCCAGTGCCAGATGTTCCACGTCTGCGTCAAGCT
GCCCGGAGTGGGGGTGCAGGACTATCGATTCCTCTGTCCCAACACAACGG
CCTTCGACCAGGAGCTGCAAATCTGCGCCAATTGGTTGGATGTGGACTGC
GACAAGGCAACCTCCTTCTACGACAATGGCCACCTCAACGATCTATATCG
CAACGGAGACGAGAGCAAATCTGCCAACGAAGAGGAGGCAACCTTCCACC
TTCAACGCGCCGAAACGGGCGATATACGTCGCTCTAAGGAGAACCACAAT
AATAACAATATTAACAACAATCGTGGAGCGGACCAAAAACCACGCCATCG
CCACAATTATGCCCAGACAGGTGGCAGCTCTAGTTCCAGCTCCAGTCCCA
AATTGGAGATCACGCAATCCACCAAGCGACCCATTTCCACCTATTACACG
CCGACCACTTTGGGCAGCACCACCACATCCACTACATCGACCACAACCAC
GACGGAACGCAGCTATTACAACAATAATTACAACAACAATTACAGCAACA
ATGACGACTCGAAGCAAGATTTAGACGATATCTTCAAGGGTTCACACAGC
TCGCACTTCTTCTCCAACCGCCACGGGGGTCGGGAATACGACGAGGAACC
CAGCCGGCCCAAGCCCAACGACTTTTCGGATTACCAGCGCAAGACGACCC
GGGTCACGCCCACGCGCGGTGTTCAACGTCCAACTTCCGGTCGAGTAGTC
CGATTCCATCCAGCAACGCTGCTCCAGCACGACCAAGTCCCTGAAGAAGA
TCACCTGCATGCCACTTTCAACACGGGACTTCTGGATAAGCTCTCGCAAT
ACAAGAGAGTCCATCTTACAGGGCGGTTCACACTCCGCGGTCCAGGCAGC
AGCATTACACAG
FMO10152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13643-RC | 3068 | CG13643-RC | 195..1293 | 7..1105 | 5150 | 98.5 | Plus |
| CG13643-RB | 3248 | CG13643-RB | 375..1473 | 7..1105 | 5150 | 98.5 | Plus |
| CG13643-RE | 3065 | CG13643-RE | 195..1290 | 7..1105 | 5095 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24899861..24900158 | 765..468 | 1490 | 100 | Minus |
| 3R | 32079331 | 3R | 24899469..24899799 | 1095..766 | 1175 | 93.7 | Minus |
| 3R | 32079331 | 3R | 24903207..24903425 | 266..48 | 1095 | 100 | Minus |
| 3R | 32079331 | 3R | 24900281..24900487 | 469..263 | 1035 | 100 | Minus |
| 3R | 32079331 | 3R | 24905339..24905380 | 48..7 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2583..2684 | 665..767 | 133 | 67.6 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2849..2908 | 685..745 | 131 | 70.5 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2743..2802 | 685..745 | 122 | 68.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3588..3628 | 722..762 | 115 | 75.6 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1258..1290 | 718..750 | 111 | 81.8 | Plus |
FMO10152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:57 Download gff for
FMO10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13643-RA | 184..1296 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:33 Download gff for
FMO10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13643-RB | 367..1479 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:59 Download gff for
FMO10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13643-RB | 367..1479 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:59 Download gff for
FMO10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24899454..24899799 | 766..1112 | 94 | <- | Minus |
| 3R | 24899861..24900157 | 469..765 | 100 | <- | Minus |
| 3R | 24900282..24900486 | 264..468 | 100 | <- | Minus |
| 3R | 24903210..24903424 | 49..263 | 100 | <- | Minus |
| 3R | 24905339..24905382 | 1..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:33 Download gff for
FMO10152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20725176..20725521 | 766..1112 | 94 | <- | Minus |
| arm_3R | 20725583..20725879 | 469..765 | 100 | <- | Minus |
| arm_3R | 20726004..20726208 | 264..468 | 100 | <- | Minus |
| arm_3R | 20728932..20729146 | 49..263 | 100 | <- | Minus |
| arm_3R | 20731061..20731104 | 1..48 | 91 | | Minus |
