FMO10154.5prime Sequence
1139 bp (1031 high quality bases) assembled on 2010-11-05
> FMO10154.5prime
CAGTCGACATGGACTCCTACTTCGACTCGGCCATCGAGTACAATCGATCC
AACCCCATCAGCCTGGCCAGGACCAGCAGCCAGGCCCAAACCGTGCAGAA
CGAGAAGAACTGGGAGTGGTCGTACCTTGTGAGAAAATGTCGCAACCTGG
AGCTGGAGGACTCGTACGACCTATACATGCGTCGCCTGCGCGTCGGCTAC
CTGTCGCTGTTCATCTTCATCCACGTGGCGGTGACGGTGATCCACACGCT
GCTGCTGCTGACCACGCCGGAGATCAAGTACGTGTACGTGGACATGGTGG
CCTACATGTGCTCCGGCCTGGTCATCTGGGTGGTGCTGGGCGTGAACTTT
CGCAGCGAGCTGGTGAGCAAGCACGGCTGGGTGGTCTACGCCACCTCCTG
GCTGGCGGTGTGTGTAATGGTCCTGATGGACATCGGACTGAATGTTTACC
ACGCCACCAGCCACAACGACATCCTGAATCCGATCTACGATGCGTATACG
CTGTACGCCATATACATGTTCATGCCGGTGCCGTACCTGCTGCAGCCGTT
TGTCCTTGGATCGGCAGTCACCTTTTGCTACATAATAAACTACAGCTTCG
TGATCACCGCCAAGGATGACAACCAAATGCACAGCATCCTGAACGAGGCC
ATATACCTGAGCTGTGTCAACCTACTGGGCATTTTCTTTCGCCTGATGAG
GGATATAGCGCTACGCACCACCTTCCTCGATCGCCGGCAGTATGTGGAGG
AGAATCTCCTGTTGCGCTATGCCAGGGATCAGGAGCGGAGTCTCTTGCTT
AGCATCCTGCCTGCCCAGATCGCCGATCGGCTGCAGGAGGATGTGAAGAA
CCGCATCGAGCGATCCAAGCAGCAGCACCAGCAGCAGTCGCAGTGGATCT
GCGCAGGGTGCGGATAGCCAGACCCTTAAAGTGGCGACAACCGGACCATG
GCACCCTTTTCATTGAGCCCCACGAGATGTCACCGTCCTCTACGCGGATG
GTGGTCACTAACACCCCACTTGACCACCACCCTGGATGTGTGAAGAAGCT
AGTGGAGGCTCTGCACGATCTCCTTCTGGCGTTCCGACATTGCAGCGAGG
GATTACAACTTGCCTGGAGGAATCAGTTCTTGGGCGATT
FMO10154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ACXD-RB | 4118 | CG5712-RB | 526..1655 | 8..1139 | 5165 | 97.8 | Plus |
| ACXD-RA | 4112 | CG5712-RA | 526..1655 | 8..1139 | 5165 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2239092..2239916 | 131..951 | 3960 | 99.5 | Plus |
| 3L | 28110227 | 3L | 2238427..2238550 | 8..131 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 2239978..2240116 | 951..1093 | 350 | 91 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:53:38 has no hits.
FMO10154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:58 Download gff for
FMO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXD-RA | 518..1625 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:35 Download gff for
FMO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXD-RA | 520..1627 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:00 Download gff for
FMO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXD-RA | 520..1627 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:00 Download gff for
FMO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2238421..2238550 | 1..131 | 96 | -> | Plus |
| 3L | 2239093..2239916 | 132..951 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:35 Download gff for
FMO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2238421..2238550 | 1..131 | 96 | -> | Plus |
| arm_3L | 2239093..2239916 | 132..951 | 99 | -> | Plus |
