FMO10155.5prime Sequence
1128 bp (983 high quality bases) assembled on 2010-11-05
> FMO10155.5prime
CAGTCGACATGTCCGCCGTACCGGTTGCCATCAAAACGGAGGAAGTTATT
CTAGAGCACGCCGAATACAACAGCGCCGAGGAATTGGATGAGGAATTGCA
ATTGCAACTAGAGGATTCAGGGGGTGAGAACTATCACATCGAGTTCGCCA
GCGAGTCAGCTCATCAGGGTTCTCAGCGTCGACAGTCGAGCATGAGCGGT
ACGAATACCTCCAAGGGTGGAGGAGGAGGGGGCAGCGGGGCCTTGAGCGA
TGGAGACGGTTCGGGAAAGCCCCTTGTGGACAGCGAGAAGCGAATGCGTC
GGGAAATCGCCAACAGCAACGAGCGCAGACGCATGCAGAGCATCAATGCC
GGATTCCAGAGTCTGCGATCCCTGCTCCCGATACACGAAGGCGAGAAGTT
GAGCAAGGCGGCCATCCTACAACAGACCTTCCAATACATTGTGGAACTGG
AGAACCAGAAGACGCAGCTGCTGACGCAGAACAGTGAACTGAAGCGACAG
GTGGGCGAGCACGAGGCCGGCGGTTCTGGCGATGGTGGTGGTACCAACTC
CGGCGGAAACTACAATGATTCCAATGCCAGCGGGGGCAATTCCACGGCGG
TGGCCATCAAGAAACGGAAGCTGACTGATAACGTGATTAACATCCAGGCG
ATTAGTGACAGTTCCGACGAAGGTCTGGGATCGATGTCTCCAGAGCCGAT
GACTCTGCTGACAGCCGGCGGAGCGGCGGCCACCAAACTGAGCAATGCTG
CTACTCTTCTGGCGGCCAAGGAGCTGCATGAGTCGAAGAAGCAGTTGGAG
AAGGAGCGCAGTCTGCGGCGACTCCTCGAGGATGAGCTCCAGATGATCAA
GCGGCAGCTGTACAGCGTGGCAACCGCACCGCCCGGAACAGCTGTGGCCG
CCGCATCCGGCGCAGTAGTGCGCCTACATTCCACGTGAGGTTCATCGAGC
ACCCCGATAACTTTGTGCGCAGCGAGGATTTGGAGGAACTTGGCCGGCCC
TGTCCTCGTATGTCGAAATCGATGAATGACTGGCCAGCACCAGGTGGTCG
TTGCTCCACATCGAGGAACTGGAGGACGATGCCGTGCGAAATATAGCCGA
GATCAGTGCACGAGAGGTCATCTGTCTC
FMO10155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crp-RB | 4402 | CG7664-RB | 540..1663 | 7..1122 | 5150 | 98 | Plus |
| crp-RA | 3537 | CG7664-RA | 540..1663 | 7..1122 | 5150 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16266339..16267019 | 1084..406 | 2930 | 98 | Minus |
| 2L | 23513712 | 2L | 16278862..16279169 | 408..101 | 1525 | 99.7 | Minus |
| 2L | 23513712 | 2L | 16287098..16287191 | 100..7 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:53:41 has no hits.
FMO10155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:58 Download gff for
FMO10155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 531..1637 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:38 Download gff for
FMO10155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 533..1639 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:02 Download gff for
FMO10155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 533..1639 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:02 Download gff for
FMO10155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16278863..16279169 | 101..407 | 99 | <- | Minus |
| 2L | 16287098..16287196 | 1..100 | 96 | | Minus |
| 2L | 16266319..16267017 | 408..1101 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:38 Download gff for
FMO10155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16278863..16279169 | 101..407 | 99 | <- | Minus |
| arm_2L | 16287098..16287196 | 1..100 | 96 | | Minus |
| arm_2L | 16266319..16267017 | 408..1101 | 97 | <- | Minus |
