FMO10159.5prime Sequence
1128 bp (1033 high quality bases) assembled on 2010-11-05
> FMO10159.5prime
CAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCCTGCTGACC
ACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAATGGCATGG
AAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTCGCCAGTGA
TATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGCTAAATAAG
CCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGGTACAACCT
GTGGCTGGATCTGGAGCAGTTGGTCATCCCCATGGTCTACTGTTGGATAG
ACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCCACAACACT
CCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAGGTGGTCGA
GTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAAGGATATAG
CCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATATTCATGGA
GCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAGTTCTTCAT
CGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAATCAGTCGG
CTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCCTGGTTTTC
TTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAGCGCATGAT
CAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAAAGTGTTTG
CCATGGGCGATGATCTCGACTCGTTCGCCCTGAGTGCCAAGATCCTCAAG
GCGGAACAGATAACACACCCATCCACGGCCTGTTTGCTGCCCTCGCCACT
GTTTTGGAAGCCATCCGAGGTGCTCGCCATGACTCCAAGCAGAAACTATA
CGATGGCACAGCTGGAAGAGTTCTTCAAAACCTCGACTACATGACGGCTG
GGAAATGCGCAAGGACACGATTCGTACAACCGAAACTTCGATCCACGAAT
GGTGGAACTGCACTGTCTTCTATGGCGAAGCATCGACCCGTCGAAAGACT
GCAGTACAAGAAATCGACTAATGGGAACGCCCAGTGATATGATCTCGCAC
GACCGTTACACGTCCTGCGACTGCAAAT
FMO10159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18858-RB | 2029 | CG18858-RB | 431..1492 | 9..1066 | 5075 | 99 | Plus |
| CG18858-RA | 1817 | CG18858-RA | 431..1492 | 9..1066 | 5075 | 99 | Plus |
| CG31683-RB | 1823 | CG31683-RB | 437..1498 | 9..1066 | 5045 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20457487..20457994 | 1030..525 | 2255 | 98 | Minus |
| 2L | 23513712 | 2L | 20448370..20448873 | 1030..529 | 2235 | 98 | Minus |
| 2L | 23513712 | 2L | 20458054..20458431 | 533..156 | 1875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20448937..20449314 | 533..156 | 1860 | 99.5 | Minus |
| 2L | 23513712 | 2L | 20449381..20449528 | 156..9 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 20458498..20458645 | 156..9 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:53:18 has no hits.
FMO10159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:55 Download gff for
FMO10159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 429..1511 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:23 Download gff for
FMO10159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 422..1504 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:51 Download gff for
FMO10159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18858-RA | 422..1504 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:39:51 Download gff for
FMO10159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20458059..20458430 | 157..528 | 100 | <- | Minus |
| 2L | 20458498..20458649 | 1..156 | 97 | | Minus |
| 2L | 20457468..20457990 | 529..1047 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:23 Download gff for
FMO10159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20457468..20457990 | 529..1047 | 97 | <- | Minus |
| arm_2L | 20458059..20458430 | 157..528 | 100 | <- | Minus |
| arm_2L | 20458498..20458649 | 1..156 | 97 | | Minus |
