FMO10161.5prime Sequence
1108 bp (1012 high quality bases) assembled on 2010-11-05
> FMO10161.5prime
CAGTCGACATGGCGTCCACCAAGTACGACAGCTTTGAGAAGATATGGTCT
GGGCCAAAGGACAAGGAGTACTACGGTCCGGATATGACGCTGGGCGAGGT
GGCACTGATCATCCTGCGTCTGTACTCGGACAAGGTGATGCAGGTGTATG
ATCCCACGGGCGAGGAGCTCACCGGTAGTCAGTTGCTGGAGCAAAGTCGT
CGATTGGCCCACGCCTTTCAACGATTGAAGCTGCAACGCGGCGATGTGGT
TGGCATTTCGGCCAAGAACACCACCTATCTCACCGAAGTGGTCATCGCAG
CCCTGCTGAATGGCACACCCATCAACCCACTGCATCCGGACTTCGATGCG
GAAACCACGGCCTATATGTTCGAGATCACGAAGCCCAAGGTGATATTCTG
CGACCTGGACAACTACCAGACCTTGAGCGCGGTCAAAAGCAGTCTCAAGT
TCAAGACGGAGATCATTCTGCTCACTGGAACTCTGCCTGGAGTGCGTAAC
ATTCAGGATTTGCTTGCAGATGGCTGCACTGGATACGATGAGAAAACACT
CTTTGCCTGCCCGCATTTGTGTGGCGATGATACGGCCTTCATCATCACCT
CCTCGGGTGTAACCGGTTTGCCAAAGGGCGTAACCCGTTCGCATCGCAGT
CTGCTGAACAGTGCCAAAATCCCTCAGCTCTTTACCTCGGATACAGTGCT
GTTCTGCTTCAGTCCGCTCTATTGGATCAGCTGTATCTTCACACTGCTCG
CTTCGCTGGTCAATGGATGTCGCAGATCATCACCAATCGTCCTTTCAGCG
TGGCGTACTTTGCAGACCTTGTGGAACGACACCAGGTCAGCTTTGTGCTC
ACAGTGCCCCACCACATGGCTCTGCTGGCCAAGAGCCCAGAGAGACAGGA
GCTAGCAGCCAAGATGCAGTGTGTTCAGTCCTTCGTGTGCAGTGGCTCGA
AGGTACCGATGGGGATCTGCCGGCAGTTGTACGAGCTACTGGGTGGCGAA
CAAATTCCCCGTGCTTCTCCGGTCTCCCAGAGACCCGGAGGATCCTCAGA
ATGTGGGAGTCCACTGGGCAGCTAGGCCAGTTGCTGCAATTGTTCAAGTT
CCGTGTTA
FMO10161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9993-RA | 1802 | CG9993-RA | 78..1173 | 9..1101 | 5085 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20851706..20852048 | 351..9 | 1715 | 100 | Minus |
| 2R | 25286936 | 2R | 20850798..20851208 | 1080..671 | 1605 | 95.4 | Minus |
| 2R | 25286936 | 2R | 20851449..20851648 | 550..351 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 20851267..20851386 | 670..551 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:53:58 has no hits.
FMO10161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:13:01 Download gff for
FMO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9993-RA | 67..1061 | 1..995 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:48 Download gff for
FMO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9993-RA | 71..1065 | 1..995 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:09 Download gff for
FMO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9993-RA | 71..1065 | 1..995 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:09 Download gff for
FMO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20851449..20851647 | 352..550 | 100 | <- | Minus |
| 2R | 20851706..20852054 | 1..351 | 98 | | Minus |
| 2R | 20850883..20851208 | 671..995 | 99 | <- | Minus |
| 2R | 20851267..20851386 | 551..670 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:48 Download gff for
FMO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16738388..16738713 | 671..995 | 99 | <- | Minus |
| arm_2R | 16738772..16738891 | 551..670 | 100 | <- | Minus |
| arm_2R | 16738954..16739152 | 352..550 | 100 | <- | Minus |
| arm_2R | 16739211..16739559 | 1..351 | 98 | | Minus |
