FMO10168.5prime Sequence
1137 bp (1028 high quality bases) assembled on 2010-11-05
> FMO10168.5prime
CAGTCGACATGGACTACGATTTCAAGATGAAAACGCAGATAGAGCGTACG
AAAGTGGAGGACCTATTCAACTACGAGGGCTGTAAGGTGGGACGCGGAAC
ATACGGCCACGTCTACAAGGCGAAATGGAAGGAGACAAGCGATGGCAAAG
AATATGCCTTGAAGCAGATCGACGGCACCGGATTGTCCATGTCCGCCTGC
CGCGAGATCGCATTGCTGCGCGAACTGAAGCATCAGAACGTAATTACCCT
CATCCGGGTGTTTCTGTCGCACAACGACCGCAAGGTGTTCCTGTTGATCG
ACTATGCGGAGCACGACCTGTGGCACATCATTAAGTTCCATCGGGCTGCT
AAGGCCACCAAAAAGCAGGTTGTGGTTCCCCGCGGTATGGTTAAAAGTCT
GCTATATCAGATTCTGGATGGGATTCACTATCTGCACAGTAATTGGGTGC
TACATCGTGACCTGAAGCCGGCCAACATCCTGGTGATGGGCGATGGCAAC
GAGAGGGGCCGCGTAAAAATCGCCGACATGGGTTTCGCGCGGCTCTTCAA
TGCCCCATTGAAACCGCTGGCAGATCTGGATCCCGTGGTGGTTACCTTTT
GGTATCGCGCTCCGGAACTGCTGCTTGGCGCTCGTCACTACACCAAGGCT
ATCGACATCTGGGCTATTGGCTGTATTTTCGCCGAACTACTCACTTCGGA
GCCCATCTTCCATTGCCGCCAGGAGGACATAAAGACCAGTAATCCGTACC
ATCACGATCAGCTAGACCGCATCTTCAATGTGATGGGCTTTCCGCAGGAC
AAGGACTGGGAGGATATCAAGAAGATGCCGGACATCATACGCTGACAAAG
GACTTTAACGCTCCACATACTCCACCTGCTCGCTGGCCAATACATGGAAG
GCACAAATAAGCCAGACAGCAAGGCCTTTCACCTGCTGCAGAAGCTGCTG
CTATGGATCCAACAAGCGCATCACCTCGAACAGGCCATGCAGGATCAGTA
CTTCCAGGAGGAGCCGCAGCCACGCAGGACTGTTCGCCGGCTGCCCATAC
CGTAATCCAAGCGTGAATTCCCTCCCGACGACGACAGAGATCGTCGATAA
TAGGGACGTGGCACAAGTGGAGGTAACATGCGTCAAC
FMO10168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk8-RA | 1529 | CG10572-RA | 66..1154 | 9..1085 | 5070 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9837455..9838414 | 1085..138 | 4145 | 98.1 | Minus |
| 3L | 28110227 | 3L | 9838475..9838605 | 139..9 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:54:18 has no hits.
FMO10168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:13:05 Download gff for
FMO10168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 40..1139 | 3..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:58 Download gff for
FMO10168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 81..1180 | 3..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:18 Download gff for
FMO10168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 60..1159 | 3..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:18 Download gff for
FMO10168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9837470..9838412 | 140..1070 | 98 | <- | Minus |
| 3L | 9838475..9838611 | 3..139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:58 Download gff for
FMO10168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9830570..9831512 | 140..1070 | 98 | <- | Minus |
| arm_3L | 9831575..9831711 | 3..139 | 97 | | Minus |
