FMO10171.5prime Sequence
488 bp (488 high quality bases) assembled on 2010-11-05
> FMO10171.5prime
CAGTCGACATGGCTGATCAGCAAACCGAACGCTCGTTCCGCAAGCAACAC
GCGGTGGTCGTTGTGCGTCGCAAGAGCCCCAACTTGAAGAAAAGGCCCCG
TTTCTATCGCCAAATTGGCCTGGGCTTCCGCGCTCCGGCGGAGGCCATCG
ATGGTACCTACATCGACAAGAAGTGCCCCTGGACCGGTGATGTGAGGATC
CGTGGTCGCATTCTGACCGGCGTGGTCCGCAAGGCCAAGATGCAGCGCAC
CATTGTCATTCGGCGCGACTACCTGCACTTTGTGCGCAAATACAGCCGTT
TCGAGAAGCGTCACCGCAACATGAGCGTCCACTGCTCCCCTGTGTTCAGA
GATGTTGAGCATGGCGATATTGTCACCATTGGTGAGTGCCGTCCTCTGTC
CAAGACTGTGCGCTTCAACGTCCTGAAAGTCAGCAAGGGTCAGGGAGCCA
AGAAGAGCTTCAAGAAGTACGCAAGCTTTCTAGACCAT
FMO10171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS11-RB | 569 | CG8857-RB | 28..491 | 7..470 | 2320 | 100 | Plus |
| RpS11-RC | 738 | CG8857-RC | 165..494 | 141..470 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12199834..12200041 | 349..142 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 12200427..12200553 | 144..18 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 12199469..12199592 | 470..347 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:53:51 has no hits.
FMO10171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:13:00 Download gff for
FMO10171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RB | 36..510 | 1..476 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:44 Download gff for
FMO10171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RB | 23..497 | 1..476 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:06 Download gff for
FMO10171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RB | 23..497 | 1..476 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:06 Download gff for
FMO10171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12199834..12200039 | 144..349 | 100 | <- | Minus |
| 2R | 12200428..12200555 | 14..143 | 98 | | Minus |
| 2R | 12199463..12199589 | 350..476 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:44 Download gff for
FMO10171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8087339..8087544 | 144..349 | 100 | <- | Minus |
| arm_2R | 8087933..8088060 | 14..143 | 98 | | Minus |
| arm_2R | 8086968..8087094 | 350..476 | 97 | <- | Minus |
