FMO10172.5prime Sequence
1174 bp (1043 high quality bases) assembled on 2010-11-05
> FMO10172.5prime
CAGTCGACATGAGTACCGAAAAGTGGGAGGACAACGAGGAAATCAAAATA
TTCCGCGAATATTTGCGCATAGCTACGGTGCAGCCAAATGTGGATTACAC
CGAATGTGTGGAGTTCCTGAAAAGGCAGGCTCACAGCCTGGATCTTCCCG
TGGATGTTATATATCCAGTGGAGAAGAAGCCTGTGGTGATCATCAAGTGG
TTGGGCACCGAACCGGAGCTGCCCTCCGTCATTCTCAACTCGCACATGGA
TGTGGTGCCGGTGTTCCGTGACAAGTGGACCCACGATCCCTTCGCTGCCG
ATATCGATGAGGAGGGCAGGATCTTTGCGCGCGGTACTCAGGACATGAAG
TCGGTGGGCACAGGATATCTGGGTGCCATCCGCCTGCTTAAGGCAAGTGG
TGTCCAGCCCAAGCGCAATTTCTTCGTGACCTTTGTGCCCGATGAGGAGA
TCGGCGGCGAGCTGGGCATGCAGGAGTTCGTCAAAACGGAATACTACAGC
AACATGAATGTTGGTTTCAGTCTGGACGAGGGCGGCACCAGTGAAATAGA
TCTGTTCTATGTCTTTTATGCCGAACGTATGCGATGGGGTCTCAAGCTGA
ATTTCAGTGGAACCTCTGGACACGGCTCCATGTTGCTGCCCAGCACTGCC
GGCGTGAAACTGAACTATGTGCTCAACAAGCTGACGGAGTTCCGCGAATC
GCAGGTTCAGAGGCTGGCCAATGATCAGACAATCAACATCGGTGATGTGA
CAACTATCAATCTCACCCAGCTGAGCGGTGGAGTCCAGAGCAATGTGGTG
CCTCCTCATTTCGAGGCTGTCTTCGACATGCGTCTGTCCATCACCCTGGA
TGTGGTTGCCTTTGAGAAACAGATCCACGATTGGTGCGAGGAGGCAGTGG
CGGCATCGAGATCTCCTTCGACGAGAAGAACCCTACGTGGCACCCACAAA
GATCGACGACTCCAATCCATTCTGGCTGGCTTTCAGCCTGCCACCGATGA
CTTGGCCTTAAGATCTTACCCATTGTCTGCCCCGGGTGCCACGACAGCAA
GAACATCGAGCTCAGGCATTCCAGCCTTGGGAATTCTCCACCCACTCAAT
ACCACATGCCCATCATGACTACCGAATGAGTCTTGGGCGGCGACCTATGT
GAGGCCATTCAATATACCAGAAAA
FMO10172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17109-RB | 1373 | CG17109-RB | 44..1220 | 9..1174 | 5175 | 97 | Plus |
| CG17109-RA | 1313 | CG17109-RA | 44..1220 | 9..1174 | 5175 | 97 | Plus |
| CG6733-RA | 1291 | CG6733-RA | 26..1013 | 3..985 | 1395 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23095883..23096373 | 100..590 | 2455 | 100 | Plus |
| 3R | 32079331 | 3R | 23096431..23096846 | 588..1000 | 1915 | 99 | Plus |
| 3R | 32079331 | 3R | 23097912..23098400 | 105..590 | 640 | 75.9 | Plus |
| 3R | 32079331 | 3R | 23098460..23098764 | 591..895 | 535 | 78.4 | Plus |
| 3R | 32079331 | 3R | 23095733..23095823 | 9..99 | 440 | 98.9 | Plus |
| 3R | 32079331 | 3R | 23099802..23100165 | 180..543 | 425 | 74.5 | Plus |
| 3R | 32079331 | 3R | 23100283..23100572 | 608..897 | 415 | 76.2 | Plus |
| 3R | 32079331 | 3R | 23092066..23092491 | 110..532 | 385 | 73.2 | Plus |
| 3R | 32079331 | 3R | 23092616..23092907 | 604..895 | 335 | 74.3 | Plus |
| 3R | 32079331 | 3R | 23091871..23091961 | 9..99 | 245 | 84.6 | Plus |
| 3R | 32079331 | 3R | 23093909..23094091 | 176..358 | 240 | 75.4 | Plus |
| 3R | 32079331 | 3R | 23096909..23096990 | 1003..1082 | 190 | 87.8 | Plus |
| 3R | 32079331 | 3R | 23097753..23097841 | 3..91 | 190 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:53:54 has no hits.
FMO10172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:13:01 Download gff for
FMO10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17109-RA | 35..1134 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:47 Download gff for
FMO10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17109-RA | 38..1137 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:07 Download gff for
FMO10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17109-RA | 38..1137 | 1..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:07 Download gff for
FMO10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23095727..23095823 | 1..99 | 94 | -> | Plus |
| 3R | 23095883..23096371 | 100..588 | 100 | -> | Plus |
| 3R | 23096432..23096849 | 589..1002 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:47 Download gff for
FMO10172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18922154..18922571 | 589..1002 | 98 | -> | Plus |
| arm_3R | 18921449..18921545 | 1..99 | 94 | -> | Plus |
| arm_3R | 18921605..18922093 | 100..588 | 100 | -> | Plus |
