FMO10177.5prime Sequence
572 bp (572 high quality bases) assembled on 2010-11-05
> FMO10177.5prime
CAGTCGACATGAAGCTACAGTTGGCTCTCGTTCTATGTGGATTGACTCTG
GCCTTGGGCCAGATTGTTCCCCGCAGCTCCTGGTGTCCTGTGCCCATCTC
GCCGCGAATGCCCAGGCTCATGGTACCGGTGCGACTGATTATCATCCATC
ATACAGTCACGGCCCCTTGCTTCAATCCGCATCAGTGCCAGTTGGTACTT
AGGCAAATTCGAGCCGATCATATGCGCAGAAAGTTCAGGGATATTGGCTA
TAATTTCCTGATCGGCGGGGATGGTCGAATCTACGAGGGCTTGGGTTTCG
GCATCCGTGGCGAGCATGCTCCCCGCTATAACAGCCAGTCCATTGGCATT
GCTTTCATTGGCAACTTCCAGACTGGATTACCTCCTTCGCAGATGCTCCA
GGCTGCCCGAACCCTCATCCAAATCGCTGTGCAGCGTCGCCAGGTTTCGC
CCAACTATTCCGTGGTGGGTCATTGCCAAACGAAGGCCACTGCTTGTCCG
GGAATACACCTTCTCAACGAGCTCAAAAAGTGGCCAAATTGGCGACCAAA
GCCTGCAAGCTTTCTAGACCAT
FMO10177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB2-RA | 688 | CG9697-RA | 6..553 | 7..554 | 2740 | 100 | Plus |
| PGRP-SB2-RB | 668 | CG9697-RB | 6..533 | 7..554 | 2430 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16726546..16726911 | 7..372 | 1830 | 100 | Plus |
| 3L | 28110227 | 3L | 16726972..16727153 | 373..554 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:54:44 has no hits.
FMO10177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:13:09 Download gff for
FMO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB2-RA | 1..556 | 2..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:10:14 Download gff for
FMO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB2-RA | 1..561 | 2..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:32 Download gff for
FMO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB2-RA | 1..561 | 2..564 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:32 Download gff for
FMO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16726540..16726911 | 1..372 | 98 | -> | Plus |
| 3L | 16726972..16727161 | 373..564 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:10:14 Download gff for
FMO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16719640..16720011 | 1..372 | 98 | -> | Plus |
| arm_3L | 16720072..16720261 | 373..564 | 97 | | Plus |
