FMO10195.5prime Sequence
1123 bp (1030 high quality bases) assembled on 2010-11-05
> FMO10195.5prime
CAGTCGACATGGGTAAGGACTACTACAAAATCCTGGGTCTGCCCAAAACT
GCCACCGACGATGAGATCAAAAAGGCCTACAGGAAACTGGCCCTGCGTTA
TCATCCGGACAAAAACAAAGCCGCCAACGCCGAGGACAAGTTCAAGGAGG
TCGCCGAGGCGTACGAGGTTCTTTCGGACAAGAGCAAGCGGGAGGTGTAC
GACAAATACGGCGAGGATGGTCTCAAGAGCGGAGGCACACGAAACGGCGG
TCCGTCGAGCAACTCGTTTACATATCAGTTCCACGGCGATCCGCGGGCCA
CCTTCGCCCAGTTCTTTGGCAACAGCAATCCGTTCGCCTCGTTCTTCGAC
ATGGGCGACAACCTGTTCGACAAGAAGGTCTTCGATCTGGACACGGAACC
CGATTTCTTCTCCTCGCCCTTTGGCGGCATTGGGTCGCGACATGGTCTGG
GAAGTGGCTTCAGGCCCTCTTTCAGATCACACTCCTTCAATGTGCACACG
CCGTTCAAGAAGGAGCAGAAGCAGGATCCGCCCGTCGAACACGATCTCTA
TGTGACGCTGGAGGAGATCTACCACGGCTGTGTTAAGAAAATGAAAATCT
CCCGGCGCATCGTTCAGGCGGACGGCAGTTCCCGCAAGGAGGAGAAGTTC
CTGGCGATATCCATCAAGCCCGGCTGGAAGTCCGGCACCAAGGTCACCTT
CCAGAAGGAGGGCGACCAGGCGCCCGGAAAAATTCCCGCCGACATTGTGT
TCATCATCCGGGACAAGCCGCACGCCATGTTCAAGCGCGAGGGCAGCGAT
CTGCGCTACACGGCGAGACTGACGCTCAAGCAGGCTTTGTGCGGCGTTGT
CTTCCCAGTTTCCTACCATGTCCGGCGACAAGTTGCGCATCAGCACCATG
CAGGAGATCATCAAGCCGACACGGTGAAGCGCATCCAGGGATACGGGCTG
CCATTCCCCAAGGATACGACGCGCAAGGGCCGACCTCTGGTGGCCTTCGA
CTTTCAGTTCCCGAAAAGCTGACCGCCGCCCAGAGGAGGTGCTCAAGGAC
ATGTTAGCAGCTTTCTAAAACATTCGTTTGGGCGCCGCGGGCCCAGTAAT
GGGCCATAATCCTAATTCTAACC
FMO10195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5001-RD | 1755 | CG5001-RD | 339..1388 | 9..1056 | 5065 | 99.1 | Plus |
| CG5001-RA | 1833 | CG5001-RA | 417..1466 | 9..1056 | 5065 | 99.1 | Plus |
| CG5001-RB | 1893 | CG5001-RB | 477..1526 | 9..1056 | 5065 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1192253..1192626 | 461..834 | 1870 | 100 | Plus |
| 2L | 23513712 | 2L | 1191968..1192199 | 233..464 | 1160 | 100 | Plus |
| 2L | 23513712 | 2L | 1191684..1191910 | 9..235 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 1196213..1196440 | 831..1056 | 825 | 94.8 | Plus |
| 3L | 28110227 | 3L | 5751369..5751551 | 233..51 | 300 | 77.6 | Minus |
| 3L | 28110227 | 3L | 5750854..5751021 | 802..635 | 195 | 74.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:55:01 has no hits.
FMO10195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:13:12 Download gff for
FMO10195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RA | 410..1468 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:10:25 Download gff for
FMO10195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RB | 472..1530 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:41 Download gff for
FMO10195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RB | 472..1530 | 1..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:41 Download gff for
FMO10195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1191970..1192198 | 235..463 | 100 | -> | Plus |
| 2L | 1192256..1192625 | 464..833 | 100 | -> | Plus |
| 2L | 1196216..1196440 | 834..1056 | 96 | == | Plus |
| 2L | 1191679..1191909 | 1..234 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:10:25 Download gff for
FMO10195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1191679..1191909 | 1..234 | 98 | -> | Plus |
| arm_2L | 1191970..1192198 | 235..463 | 100 | -> | Plus |
| arm_2L | 1192256..1192625 | 464..833 | 100 | -> | Plus |
| arm_2L | 1196216..1196440 | 834..1056 | 96 | == | Plus |
