FMO10196.5prime Sequence
1154 bp (1022 high quality bases) assembled on 2010-11-05
> FMO10196.5prime
CAGTCGACATGGTGCAAATCTTTAAATTCCTGTTAAAATCCAGCAAATCT
ACCGGTCGTGCCCACTTCCGGCCCACTTTTCTGGACACACTGCGCCTAGC
GGTTCGTGGAGGACATGGTGGAAATGGACTGCCCAAATACGGAGGAGTTG
GTGGCCAAGGCGGTTGCGTCTACTTGGTGGCAAAGGAAGGACTCACCCTT
CGCAAGGTCGTCCAGGGATTGAAGGATAAGCGAGTGGCAGCATCCAGTGG
CGAGGACAGTAGCAAAGCCAGCATCTTTGGACGCCGTGGAGCTGACCAGA
GGATCGAGGTGCCTGTGGGCGTCCAGGTATATGACGACCAACAAAAACTC
ATCGCCGACCTCGACGAGCACGAGGCGACATGCATTGTGGCGGGCGGAGG
TACTGGCGGATGCACGGCCACAAATTTTCTGGGACGTCCCGGGGAGAATC
GCACTGTAAATCTGGACCTAAAGCTAATAGCAGATGTGGGTCTCGTGGGA
TTCCCCAACGCTGGCAAAAGCACCCTTCTTAAGGCCGTGTCCAATGCCAA
ACCAAAAATTGCAGCTTATCCCTTTACCACCATCCGACCCCAGATTGGAA
CCATCGAGTACAGGGACCTGCGCTCCATCACAGTTGCCGATCTTCCCGGT
CTGATCGAGGGCGCCCACGCGAACTTCGGCATGGGTCACAAGTTCCTGAA
GCACATCGAACGCACCCGCCTGCTGGTCTTCATGGTGGATATATTCGGCT
TCCAGCTGAGTCCCAAACATCCGCATCGCGACTGCTTGGCCAATGTGTAT
GCGCTCAACAAAGAGTTGGAGCTCTACGATCCATCGCTGCTGGAGAAGCT
CAGTGTCCTTGCTGCTGAACAAATGGACAAGGAGGGTGCCCACGAGATCT
TTACCAAAGTTTAGCCGCTCGTCAGCGATTTGGTCAGCGGACTTGAACAG
TGCCCCGAGAACTGCGTCCGAAACAGGTGCTCATTTCGACAGCATTGTTC
CCCATTCGGCATGAACTCGTCGAGATCACGCCAGGGAAATTCCAGCTAAG
GAGGACCTTGGTGGCGCTGGCTGTAAAACAGTTCCTGCGACCAAGGACCA
GGTCCAAGAAAACTTAAAACGCCGCTTTGGGGTGGTGGGGGTCCACAAAA
ATAA
FMO10196.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10628-RA | 1254 | CG10628-RA | 43..1178 | 9..1139 | 5090 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19757950..19758472 | 573..51 | 2615 | 100 | Minus |
| 2L | 23513712 | 2L | 19757321..19757891 | 1139..574 | 2075 | 93.7 | Minus |
| 2L | 23513712 | 2L | 19758532..19758573 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:55:04 has no hits.
FMO10196.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:13:13 Download gff for
FMO10196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10628-RA | 34..1093 | 1..1057 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:10:27 Download gff for
FMO10196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10628-RA | 36..1095 | 1..1057 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:40:44 Download gff for
FMO10196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10628-RA | 36..1095 | 1..1057 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:40:44 Download gff for
FMO10196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19757404..19757891 | 574..1057 | 97 | <- | Minus |
| 2L | 19757950..19758472 | 51..573 | 100 | <- | Minus |
| 2L | 19758532..19758577 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:10:27 Download gff for
FMO10196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19757404..19757891 | 574..1057 | 97 | <- | Minus |
| arm_2L | 19757950..19758472 | 51..573 | 100 | <- | Minus |
| arm_2L | 19758532..19758577 | 1..50 | 92 | | Minus |
