FMO10203.5prime Sequence
581 bp (581 high quality bases) assembled on 2010-11-11
> FMO10203.5prime
CAGTCGACATGGTTTCCAAAGTGGCTCTCCTCCTCGCCGTCCTGGTCTGC
AGCCAGTATATGGCCCAGGGCGTCTATGTCGTCTCCAAGGCGGAGTGGGG
TGGTCGCGGCGCCAAATGGACCGTAGGCCTGGGCAACTACCTCAGCTACG
CCATCATCCACCACACCGCCGGCTCCTACTGCGAGACCCGTGCCCAGTGC
AACGCCGTGCTGCAGAGCGTCCAAAACTACCACATGGACTCCCTGGGCTG
GCCCGACATCGGCTACAACTTCCTGATCGGCGGAGACGGCAACGTGTACG
AGGGGCGTGGCTGGAACAACATGGGCGCCCACGCCGCCGAGTGGAACCCC
TACAGCATCGGCATCAGCTTCCTGGGCAACTACAACTGGGACACCCTGGA
GCCGAACATGATCTCCGCCGCCCAGCAGCTGCTCAACGACGCCGTCAACC
GTGGCCAAAACAGCTCCGGCTACATCCTGTACGGTCATCGCCCGGCCACC
GCCACCGAATGCCCCGGCACTCACATCTGGAACGAGATCCGCGGCTGGTC
CCACTGGTCTGGTGCAAGCTTTCTAGACCAT
FMO10203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SC1b-RB | 1649 | CG8577-RB | 30..585 | 8..563 | 2675 | 98.7 | Plus |
| PGRP-SC1b-RA | 626 | CG8577-RA | 30..585 | 8..563 | 2675 | 98.7 | Plus |
| PGRP-SC1a-RA | 588 | CG14746-RA | 30..584 | 8..562 | 2640 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8713475..8714030 | 8..563 | 2675 | 98.7 | Plus |
| 2R | 25286936 | 2R | 8709762..8710316 | 8..562 | 2640 | 98.4 | Plus |
| 2R | 25286936 | 2R | 8717084..8717512 | 129..557 | 705 | 77.6 | Plus |
Blast to na_te.dros performed 2014-11-26 17:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2536 | 254..403 | 107 | 54.2 | Plus |
FMO10203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:24 Download gff for
FMO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SC1b-RA | 27..587 | 3..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:48 Download gff for
FMO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SC1b-RA | 25..585 | 3..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:43 Download gff for
FMO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SC1b-RA | 25..585 | 3..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:43 Download gff for
FMO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8713470..8714034 | 3..565 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:48 Download gff for
FMO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4600975..4601539 | 3..565 | 97 | -> | Plus |
