Clone FMO10207 Report

Search the DGRC for FMO10207

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:102
Well:7
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8111-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10207.5prime Sequence

963 bp (674 high quality bases) assembled on 2010-11-11

> FMO10207.5prime
CAGTCGACATGGCATCTCTGAGCGAAACACTTCGTAGCCACTGGCCCATC
GCTTTGTTCGGTGTGATCCTCTTCGTGGCTGGGGGCACGGAGCTCTACTG
GAACGAGGGACGAGCCGTGCACAATATGATGGCGCTGGACGAGGCACACG
CCGACATCTACTCGGTGCGCTTCACGGAGGAGGAACAGGAGGTGGGCCTC
GAGGGCAGAATCGTTCACCTATCCGGACCCATTCTCGTGGGCGAACCGCT
CACCGAACCCGACTACAACATTCAGTTGCTGGCGGTGAAGCTCCGGCGAC
GCGTCCAAATGTACCAGTGGGTCGAGGAGGCGGTCGAGCACAACTACGGC
GACAGCGTGGGAACGACGCATTCGGACTCCCGCACCTACTATTACACGCG
GGAATGGCGTGATAAGATCGTGGACTCGCGAAACTTCTACAACCGCCACG
GACAACCCAATCCCAGTCACTTTCCCATCGAAAGCCACGTTCAGGTGGCG
GATGCCGTCTTCATTGGACGCTATGAACTGGGTGCGGAGGTGAAGGACAA
GTTTAACAACTACCAGGAGCTCACTTCGGACATTCGGCCAGAGGATAGTG
GCGTCAAGCTGCCCCTGATTTATATATTATCACACCAATGATGTGTTCAA
TCCGGAGGTGGGTGACCCCCCCCCCTCCCCATTCAGCTTCACGGGAATGG
ACGGCGAGGTGTTCAGCGTGCTGGGCAAGCTGTCGGGCAACTAACTGGTG
TCTTACATAACCTCCCGTGGCGTTCCACTCCTGTACTATTATTCTTGGTG
GGCTCACTGTCCAGGAAGTGTTCCGGTTGGAGGCTCGTGCCCAGGTCTTG
CACACCTGGTGGTGGCGCTTCGTCGGCTGGCTGCTGATCTTCTTCCGCCG
TCATCTTTTATACTATCTTTTTATCCCTCCCTCTGCTGTCTGTACCGGTG
CCGCTTATTGGTG

FMO10207.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8111-RA 1340 CG8111-RA 88..969 9..895 3870 96.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7914096..7914651 895..335 2145 93.4 Minus
3L 28110227 3L 7914708..7915033 334..9 1630 100 Minus
Blast to na_te.dros performed 2014-11-26 17:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 3069..3098 80..51 114 86.7 Minus

FMO10207.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:26 Download gff for FMO10207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8111-RA 77..975 1..906 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:58 Download gff for FMO10207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8111-RA 81..979 1..906 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:49 Download gff for FMO10207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8111-RA 81..979 1..906 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:49 Download gff for FMO10207.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7914708..7915037 1..334 98   Minus
3L 7914088..7914651 335..903 93 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:58 Download gff for FMO10207.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7907808..7908137 1..334 98   Minus
arm_3L 7907188..7907751 335..903 93 <- Minus