FMO10208.5prime Sequence
785 bp (216 high quality bases) assembled on 2010-11-11
> FMO10208.5prime
CAGTCGACATGATAAGCGCCGAGTGCCATTCAGAAGAATACACCCCAAAT
GACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAA
GCAGGATCCAAACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCA
TGATTCTGCTGTGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAG
AAGGTTGTTCGCGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAA
GGGTTTCGATTGGAAGACACTTAACCTGCTTGTAGCCATCGAGCAACAGT
CGCCCAACATTGCCAACGGCGTTCATATCAACCGCGAAGAAGAAGACGTC
GGCGCTGGTGACCAGGGTATCATGTTTGGATATGCCACCGACGAAACCAA
GGAATGTATGCCCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGA
TTGCTGACCCCCCCCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCC
AAAACACAAGTAACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCC
CAAGCGCGCCCACACTATTGTAGTGTCCATGCAGCATTCTGAAAAGATAT
CGTTAGAAACCCTGCCCCCCCCCACTCATTAAAAAAAGTTGTTAAAGTAG
TCATTCCCGCCAAATACATTGATGCCCCCCCCCCCCTCCTTTTATTTATT
ACTTGTGGGCCCCCGGAATCGGTGGACCTCTGGGGTGACGCTGGGCTTAC
ATGTATATAATATTTTTGTAGACCTTATGGAGGCT
FMO10208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sam-S-RG | 1971 | CG2674-RG | 158..823 | 9..676 | 3005 | 96.9 | Plus |
| Sam-S-RJ | 2309 | CG2674-RJ | 316..939 | 51..676 | 2795 | 96.6 | Plus |
| Sam-S-RC | 2380 | CG2674-RC | 387..1010 | 51..676 | 2795 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 112687..112998 | 363..676 | 1220 | 93.3 | Plus |
| 2L | 23513712 | 2L | 110754..110879 | 129..254 | 615 | 99.2 | Plus |
| 2L | 23513712 | 2L | 111004..111118 | 252..366 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 110405..110483 | 51..129 | 395 | 100 | Plus |
| 2L | 23513712 | 2L | 109751..109793 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:02:09 has no hits.
FMO10208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:27 Download gff for
FMO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M(2)21AB-RG | 136..888 | 1..760 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:00 Download gff for
FMO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RG | 150..902 | 1..760 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:50 Download gff for
FMO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RG | 150..902 | 1..760 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:50 Download gff for
FMO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 109743..109793 | 1..51 | 94 | -> | Plus |
| 2L | 110406..110483 | 52..129 | 100 | -> | Plus |
| 2L | 110755..110877 | 130..252 | 99 | -> | Plus |
| 2L | 111005..111117 | 253..365 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:00 Download gff for
FMO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 111005..111117 | 253..365 | 100 | -> | Plus |
| arm_2L | 109743..109793 | 1..51 | 94 | -> | Plus |
| arm_2L | 110406..110483 | 52..129 | 100 | -> | Plus |
| arm_2L | 110755..110877 | 130..252 | 99 | -> | Plus |
