FMO10209.5prime Sequence
1025 bp (672 high quality bases) assembled on 2010-11-11
> FMO10209.5prime
CAGTCGACATGATGCTAATGCACGAGAAACTCATGGCCGGGCAGTTCTTC
GATCTCAAGACTGATCGCAAGCCCCTGATGCACCACCACCAGTACCAGCA
CCACCAGCAGCAACCACTGCACCACTTGCCGCACAGCCAATTGCCGGTTC
AGGGATCCTTGGGCCTACCCAAAATGGATCTGTACACGGCCTACGCCTAC
CAGCAGCAGTTGCTGGGAGCTGCCCTCAGTCAGCAGCAACAACAGCAACA
GCAGCAGCAGCAACATCAGCAGCTGCAGCAGCAGCATACCTCCTCTGCAG
AGGTCCTGGATCTTTCCCGTCGATGTGACAGCGTAGAGACACCCAGGAAG
ACTCCCTCGCCGTATCAAACAAGCTATAGCTACGGCAGTGGTTCCCCCTC
GGCTTCGCCCACCAGCAATCTTCTGTATGCCGCCCAAATGCAACAGCAGC
AACATCAGCAGCAACAACAGCAACAGCAGCAGCAGCAACAATTAGCCTCC
CTGTATCCCGCTTTTTACTACAGCAACATCAAGCAGGAGCAAGCCACGCC
CACTGCTGCTCCGCCCAAGGTTACACCAACCGCTAACCTTCTGCAAACCT
TTGCTGCCGCCTCTGCTGCGGCCGCCGCTGCTGCTGCCGCTTCTTCGACC
AACTCACCAAGACCCGCCCCCAAACGCCAGCACCATGCAGATAGACGTTC
TGGAGAATCCCCTGTCACCGGCTGTTGAGGTCATCACGCCTATTACTTCC
AGCAGCGGCGAGGCGGGCACCTAATATTCTGTTCTCTTCAAGGCCTTTCC
CCGGGATCCCTTGGTCATAGCTGCCAATTTCGCAGCCACTGATGTCCTTT
TGGACAATCCGCGAGTGGAGCGCTACACGGAATACCCGCCAGTGATTTAC
ATAGATTCTTTTCCCGCAGCTCCAACGGAGGATCGCCGCACCGTAACCCA
CCCCAAAAATGCGAAGGACCACTCAAGAAGTTGATCCGTCACGAAGCAGC
TCCTTCAACCACCAACCAGCCGAAT
FMO10209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gt-RB | 1780 | CG7952-RB | 116..1111 | 12..1016 | 4230 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2427808..2428726 | 991..63 | 3745 | 95.3 | Minus |
| X | 23542271 | X | 2428801..2428852 | 63..12 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2387 | 641..601 | 115 | 75.6 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 156..214 | 644..588 | 109 | 69.5 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9186..9244 | 644..588 | 109 | 69.5 | Minus |
FMO10209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:27 Download gff for
FMO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 101..1107 | 1..1016 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:01 Download gff for
FMO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 105..1111 | 1..1016 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:52 Download gff for
FMO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 105..1111 | 1..1016 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:52 Download gff for
FMO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2427775..2428725 | 64..1025 | 95 | <- | Minus |
| X | 2428801..2428863 | 1..63 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:01 Download gff for
FMO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2321808..2322758 | 64..1025 | 95 | <- | Minus |
| arm_X | 2322834..2322896 | 1..63 | 92 | | Minus |
