FMO10211.5prime Sequence
1033 bp (872 high quality bases) assembled on 2010-11-11
> FMO10211.5prime
CAGTCGACATGGTTGCCGATATATTCAGTGAATATTATATATGCAATTTC
AACGATGCGGTGACAGTTGAAGATCTGCCCGCGGATGAGACACTGCGTCA
ATTGTGGACCCGCCAGAAACTGTGGACAATAGATGAACTCCGGGAGATCC
TTCAACGCTGGCAGGAGCATGTCAAGCCAGATCCGAATGATAATCCCACC
TCACAACTCAAGGATTTCCTGCTGCTGATATTCGCTTTTGTTCAAAACAG
TTTTACTGGGCCCTTTGACAAACTCGAAGAGTACCAACAAATCCATAGTG
AACTAGAGCTGGAGAAACTCGACGCACTCGAGAAACTGAAGGCCAGCGGC
GAGGAACTGAATCCAAATGTTATATCTGTAGAACTACTACTGATTGCCAG
GGAAATCCTTGAGGGACTTTTAGAAAACCATCCAGAATCAAAGGTCCTGA
CTTGGTGGCGATTGCGTCTGATCTGCCTGCATCAACATGTGCTGGATGAT
TTGGCGGCCTCCCTGTATGAGCAGTTTAAGTCAGCAGCTGGACATCTTCA
GGCTCATTTCAATCAGTTTGAGAGCAGGGAACTGCAATCCCTGCTACTAC
TGGAGTTGGCCAATGGCTACCTGCAGTTTCATCGCTCTGAAATAGCCTCC
CAAATACTGGATGAACTGTGTAAGTATCTCCAGGTGGAGCTAAAAGTTGA
GGGTTTACTACGAGTACGCACCACATTCCAGCAGAATGCTCTGCCACAAC
TCTGCCTCACAGTCGAGTATCTAATCGAGCAGCAGCCTCTGCCTCCAGCC
GTCCAAACAAATGAGACGACCAAATTGCCAAAACTGCTTCTTCTGGAGGA
TGACACGCGACTGGAGCGGATACGCTTTCAGTTTCTGATTGTTATTCGAA
GTGATGACGCTTCCCAGTGTCTCAAGCTCTGGTGCTGGCCAAAGTAAAGC
AATTGAACGCTCAACGCCTACGATCGCTGCCGATGAACACCTGCAGCGTA
TACACAAATCCCTTACTTTACCAGGAAACGACA
FMO10211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5290-RA | 2917 | CG5290-RA | 255..1277 | 9..1027 | 4475 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17911269..17911773 | 945..442 | 2070 | 94.9 | Minus |
| 3L | 28110227 | 3L | 17911824..17912198 | 445..71 | 1845 | 99.5 | Minus |
| 3L | 28110227 | 3L | 17912248..17912311 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:01:46 has no hits.
FMO10211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:22 Download gff for
FMO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5290-RA | 247..1272 | 9..1032 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:39 Download gff for
FMO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5290-RA | 255..1280 | 9..1032 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:37 Download gff for
FMO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5290-RA | 255..1280 | 9..1032 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:37 Download gff for
FMO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17912248..17912311 | 9..72 | 100 | | Minus |
| 3L | 17911269..17911771 | 444..945 | 95 | <- | Minus |
| 3L | 17911826..17912196 | 73..443 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:39 Download gff for
FMO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17905348..17905411 | 9..72 | 100 | | Minus |
| arm_3L | 17904369..17904871 | 444..945 | 95 | <- | Minus |
| arm_3L | 17904926..17905296 | 73..443 | 99 | <- | Minus |
