Clone FMO10212 Report

Search the DGRC for FMO10212

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:102
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSRm160-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10212.5prime Sequence

1048 bp (772 high quality bases) assembled on 2010-11-11

> FMO10212.5prime
CAGTCGACATGATGTTCACGGGCACCAATCAGCAGCAGGACACGCGGTTC
AGCGACAAGGAGAAGAAGCTGATGAAGCAAATGAAGTTCGGCGATTGCCT
GAACAAGAGGGTGGATATGTCGAAAGTCAAGCTGGACGTACTGCGTCCGT
GGATCAGCAAGAAGATCACCGACATCCTGCACATCGAGGACGACGTGGTC
GTCGAGTTTGTCTACAATCAGCTGGAGGAGGAGAAGTATCCGTGCCCCAA
GAAAATGCAGATCAATATGACGGGCTTCTTGAACGGCCGAAATGCCCGCC
AGTTTATGGGTGAACTTTGGGCCCTGCTGCTTTCGGCACAGGAAAGCGAT
TCGGGTATACCAGCGGAGTTTATACAGCAGAAAAAGGACGAGATACTCAA
ACGGGAGGAGGAACAGCGGCAGCGGGATCGATCGAGATCCCGTTCGCGTT
CCCGCCCCCAACGAGACAGTTCTAGGCGAGATCGGCAGCGTGACCGCTCC
AAATCCAAGTCCCGCTCCAGATCCCGCTCAATGAAGCCGGCCAACAACAA
CGGTTCGGTGCCCAGTGCCGCACGAGAAGCGGCCGCCAATGCGGCTGCCA
AAATCCGTAAACGCGGATCCTCCTCCGCCGCGCGTCCCGGCTCCAGGGAG
CGGAGATCCAGCCGACGACCACTTTCATTTTTTTATTTTCACGCTCGCGA
ACCGCCGGCAAAAAGACAGGCTCGGTGGAGCCCGCACCCGCCAAGACTGT
CAACGGCCGCCACTCGACGGACAATTCTTCTTCGGTACCGCCGGCCTCCA
AGAACAAGTCGCGCTCCCGTTCGCATTCCCGGTCGCGATCGCCGCGCAGT
CGATCTCGATCGCCCAGCGCCAAGCGGTCACGTTCCCACAGTTTCTTTTC
GATGCAGTCGCCGACGAGGACGCTCCAGCAGCATATCTTTGTCGCCGGGA
GCGCAACCAGGATCAGTTTGAGCACCGACGCACAAGAACAGTTGTGCCAA
AACCAGCGGCAATATTCGCAATCAATTCGTTGTGTTACTTCGGGCTAG

FMO10212.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
SRm160-RA 3862 CG11274-RA 433..1439 9..1021 4610 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13037423..13038392 20..992 4400 97.7 Plus
Blast to na_te.dros performed on 2014-11-26 17:01:49 has no hits.

FMO10212.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:22 Download gff for FMO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
SRm160-RA 420..1440 1..1029 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:41 Download gff for FMO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
SRm160-RA 425..1445 1..1029 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:39 Download gff for FMO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
SRm160-RA 425..1445 1..1029 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:39 Download gff for FMO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13037423..13038424 20..1029 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:41 Download gff for FMO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13030523..13031524 20..1029 97   Plus